Astyanax mexicanus (Mexican tetra): 111188410
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Entry
111188410 CDS
T05042
Symbol
nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2
KO
K26109
nuclear exosome regulator NRDE2
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
111188410 (nrde2)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111188410 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
111188410
NCBI-ProteinID:
XP_022517810
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All DBs
Position
14:58797..71471
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AA seq
1140 aa
AA seq
DB search
MALFPAFSGAPDSQRAQGTELEWLNNQSFRADAAQSVHQRAAEKDTTTSSPASPQRAEEQ
EDGRSVGSKRKKKKEKKKKRKKQKKRSRGGSDGSGSDTVYPSDLLTQPEPPITERVECVS
EGKFVWLDDLQNLSDPPFCIDRRSDPNNWQYKSLYRADIARYRRRGGAVLGLDGRTQAVL
WDDAPQDKKRVERKPERYFHSSIQQLLRSEPITALPTAPPTDPADSAPFLPLPPCPELQD
VPARAGGTQVDPLGVYDPGTALYLEGRGRPKTEEPRPGGADSAALLTARTEEFNRNLRQN
PTHIQLWLDFIRFQDEVSGGCGAALGAVPGAEGDGERGRLTVRALLERKLAIVERALEVN
PGSMELKLVKLALCQELWDPPALLKEWKKLVFLHPNSSTLWRRFLLFTQTHFSSFSTSRV
SAAYAKCLSTLSAVQDGTMLSHPPLPGTEEELLEIFLLQCHFLRQAGQSEKALSLFQALL
DFTFYKPDTVTHLNTRQQVEFFEPFWDSGEPRVGERGGRGWRAWMLQQERGGWVVPPETE
DDDDDDEDQDECEIRDKSEPKWRIWLDVETSREAKHWLPWRPDKSKGQSEEDCEDPDRQV
LFDDIGPSLIRVESASLKLRLLLAFLRFLGLPDPSAPPPSSTLLDDSALLDLSLDSERPL
TSCHLPLTGISAVGHMTHLSDVRKHVGLCKEGEEFLGNVLERVLPLVRAPDRTVLSLCWL
QYEKLKVLRCVYSSSSKRLRVAVRRGKRVGKRLLKLPENRSSLSLWREYAHLQWIVGNVE
EGRRVFDTALAVGGASGLQDHTLCELCLLYAQLEVEQACMGGAKASVAPPTGSRAVYVLS
RLAEGGGYSGFSGQVSPVSVLKARKAYENALSAAAEGGTPRSALIGCFGLFQYLTVGIDA
ADAVFTEARERLTPGTATATATGTEPDPSLREREAVCVLHVALLRLHSSTSAFPLSRLRM
ALTDALRLLPCSATLWHFYLLTESRYHSAGRARRFFHTVARGNQTIIPHLFSITAEQRRK
QHLDSVIRLGLPADALPVIPETGLSNRIRSLFEVAVATEEGAHCPLLWRMYMNFMVCNGD
TERGRGIFYKALQNVPWAKCVYMDAVRLFPDRVQEFLDLLVEKELRLRAPMEEVEILLEE
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggcgttatttcccgcgttttccggagcaccggattctcagcgcgcgcagggaacagaa
ctggaatggctgaataatcagagtttccgggccgacgccgctcagagtgtgcaccagcgc
gccgccgagaaggacacaaccacttccagccctgccagtccacagagagctgaggagcag
gaggacgggcggagcgtcggatcaaagaggaagaagaagaaagagaagaagaagaaaagg
aaaaagcagaagaagcgcagcagaggcgggtcggacggttccggctcggacacggtttac
cccagtgacctgctgacccaaccagaaccaccaatcactgagagggtggagtgtgtatct
gaggggaagttcgtgtggttggatgatctgcagaacctcagtgatccaccgttctgtatc
gaccggagatccgacccaaacaactggcaatacaaatccctgtaccgagcagatatcgcc
aggtacaggcggaggggcggagctgtgctgggattggacggtaggactcaggccgtgttg
tgggatgacgcccctcaggataagaagcgagtggagaggaaaccggagcgctacttccac
tcctccatacagcagctgctccgctctgagccaatcacagccctccctacagctcctccc
actgaccccgcggactccgcccccttcctccccttgcccccctgccctgagctccaggat
gtccccgctcgggcgggcgggacccaggtggaccccctgggcgtgtacgacccaggcacc
gccctgtatctggagggaaggggccggccgaagaccgaggagccgcgcccgggcggagcc
gacagcgcagccctgctgaccgcccgcaccgaggagttcaaccggaacctccgccagaac
cccacccacatccagctgtggcttgacttcatccgcttccaggatgaggtctcgggcgga
tgcggcgcggcgctgggtgcagtgccgggtgcggagggtgacggggagcgcggcaggttg
acggtgcgagcgctgctggagaggaagctagcgatcgtggagcgggcgctggaggtgaac
cccggcagcatggagctgaagctggtgaagctggcgctgtgccaggagctgtgggacccc
cccgcactgctgaaggagtggaagaagctggtgttcctccacccgaacagctccaccctg
tggaggagattcctgctcttcacccagacccacttcagctccttctccacctccagggtc
agcgccgcctacgccaagtgtctgagcacgctcagtgcggtgcaggacggcaccatgctc
tcccacccaccactgccgggcacagaggaggagctactggaaatcttcctcctgcagtgt
cacttcctgcggcaggccggccaatcagagaaagcgctcagcctgtttcaggccctgctg
gactttaccttctacaaacccgacactgtcactcaccttaacacccgacaacaggtggag
tttttcgagccgttctgggacagcggtgagccgcgggtgggtgagcgaggggggcggggc
tggagggcgtggatgctccagcaggagagaggaggatgggtggtgccacctgagacagag
gatgatgatgatgatgatgaagatcaggacgagtgtgagatcagagataagtctgagccg
aagtggaggatctggttggatgtggaaacgtctcgtgaagcgaagcactggttgccctgg
agacctgacaaaagcaagggccaatcagaggaggactgtgaggatccagacagacaggtg
ctgttcgatgacatcggcccgtccctgatccgggtggagtctgcgagcctgaagctccgc
cttcttctcgccttcctacggtttctgggcttaccggacccctcggccccgccccccagc
agcacactcctggatgactccgccctgctggacctcagcctggactcagagcgacctctg
acctcctgccacctccctctgaccgggatcagcgctgtgggtcacatgacacacctgagt
gatgtcaggaagcatgtggggctatgtaaggagggggaggagtttctggggaacgttctg
gaacgggtcctgccactggtcagggcgccggacagaactgtcctgtcgctctgctggctg
cagtacgagaagctgaaggtgttgcggtgtgtgtacagcagcagcagtaagcggttgcgg
gttgcggtgcggcgcgggaagcgggtggggaaacggttactgaagctgccggagaaccgc
agcagcctcagcctgtggcgggagtacgctcacctgcagtggattgtgggtaatgtggag
gaggggcggagagtgttcgacacggcactcgcagtgggaggggcttcaggactgcaggac
cacaccctctgcgaactctgccttttgtacgcccagttagaggtggagcaggcgtgcatg
ggcggagctaaagcctccgtggctccgcccactggctctcgggctgtctatgttctgagc
aggctggcggaggggggcgggtacagcgggttctcagggcaggtgagcccggtgtcggtt
ctaaaggcccggaaagcgtacgagaacgccctatcagcagctgcagagggcgggacacca
cggagtgctctgattggctgtttcggactgttccagtacctgacggtggggattgacgct
gctgatgcggtcttcactgaagccagagagcggctgacacccggcactgccactgccact
gccactggcacagaacccgacccgtcactcagagagcgcgaggccgtgtgcgtcctgcat
gtggcactgctgcggctgcactccagcaccagcgccttccccctgtcccgcctccggatg
gcgctgaccgacgccctgcgcctcctgccctgcagcgccaccctgtggcacttctacctg
ctgaccgagagccgttaccatagcgccggccgcgcccgcaggttcttccacaccgtcgcc
aggggcaaccagaccatcataccacacctgttctccatcaccgcagagcagcggaggaaa
caacacctcgactccgtcatcaggttgggtcttccagccgatgctctgccagtgatcccg
gagacgggccttagtaaccgtatccgctcactgtttgaggttgccgtggcgacggaggag
ggagcccactgccccctgctgtggaggatgtacatgaactttatggtgtgtaacggggac
acagagagaggaagaggaatcttctataaagctctacagaacgtcccctgggctaaatgt
gtgtatatggacgcggtgcggttgtttccggatcgggttcaggagtttttggatctgctg
gtggagaaggagctccggctccgagcgccgatggaggaggtggagatcctgctggaggaa
taa
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