KEGG   Astyanax mexicanus (Mexican tetra): 111188808
Entry
111188808         CDS       T05042                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03420  Nucleotide excision repair
amex04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    111188808 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    111188808 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:amex04121]
    111188808 (ercc8)
   03400 DNA repair and recombination proteins [BR:amex03400]
    111188808 (ercc8)
Ubiquitin system [BR:amex04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     111188808 (ercc8)
DNA repair and recombination proteins [BR:amex03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      111188808 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_EML WDR55 ANAPC4_WD40 Beta-prop_TEP1_C NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_WDR19_1st WD_LRWD1 Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_RIG_1st Beta-prop_WDR75_2nd Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_DCAF4 Nucleoporin_N
Other DBs
NCBI-GeneID: 111188808
NCBI-ProteinID: XP_022518349
Ensembl: ENSAMXG00000043719
LinkDB
Position
12:50660823..50680047
AA seq 400 aa
MLSFITARQIGLDPPVRLRRAESARRVLSLELNHDREVERIHGNGINTIDIEVIEGRYML
SGGSDGVIVIYDLENNSRKLQYTCRAVCTVGRSSRHVHRFSVETVQWYPHDTGMFVSSSF
DKTMKVWDTETLKPAEVFQFEGNVYCHHMSPIARKHSLIAVGTKDPKVQLCDLKSGSRIH
ILQGHRGEVLSVRWSPRYEHILATASADSRVRVWDVRRASGSLFTLDQQNGDQSKTSTET
VNTAHDGRVNGLCFTHDGLYLLTTGTDDRMRLWNSSTGENTLVNYGKVVNESRKGVKLTV
SQGCSPEFVFVPCGSSVMVYALHTGEMITTLRGHYNNVDCCEFHPDYQELYSGGKDCNIL
AWVPVLRGPDTEDEETAKVKGGASAAVNPAFEDAWSSDED
NT seq 1203 nt   +upstreamnt  +downstreamnt
atgctgagttttattacagcccggcagatcggactggatcccccggttcggctcagacgc
gcagaatcagcccgcagggttctgagtttggagttaaatcatgatcgagaggtggagaga
attcatgggaacggaatcaacactatagatatagaagtgatagagggcagatacatgttg
tctggaggatcagatggggtgatagtgatctatgatctggagaataacagcaggaagctg
cagtacacctgtagagcagtctgcactgtgggcaggtccagtcgtcatgtgcacaggttc
agtgtggagacggttcagtggtatcctcacgacaccggcatgttcgtctccagctcattc
gacaaaaccatgaaagtgtgggacacagagacactcaagccggcggaggtgtttcagttt
gaggggaatgtgtattgtcaccacatgtctcccatcgcccggaaacacagtctgatagca
gtcggtactaaagaccctaaagttcagctgtgtgatctgaagtccggctctcgtattcac
atcctgcagggtcacaggggggaggtgctgtcggtcaggtggtctccacgctacgaacac
atcctcgccacagccagtgctgatagcagggtgcgagtgtgggacgtccggcgagcctct
gggagtctctttactttggaccaacagaacggagaccaatctaaaacctctactgaaaca
gtgaacacggctcatgacgggcgagtgaacggtctgtgcttcacccacgacggtctgtat
ctgctcaccaccggcaccgacgaccggatgcgcctgtggaacagctccaccggagaaaac
acgctggtgaattatgggaaggtggttaatgagagccgtaagggggttaagttgacggtg
tcgcagggctgcagtccggagttcgtgttcgtgccgtgcgggagcagcgtgatggtgtac
gctctgcacacgggggagatgatcaccacgctgagggggcactacaacaacgtagactgc
tgtgagttccaccccgactatcaggagttgtacagtggggggaaggactgtaatattctg
gcctgggttccggtgctgcgaggacccgatactgaagatgaagaaactgctaaagtgaag
ggtggagcgagtgctgctgttaaccctgcgtttgaagacgcctggagcagtgatgaagat
taa

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