Astyanax mexicanus (Mexican tetra): 111190988
Help
Entry
111190988 CDS
T05042
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111190988 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
amex04990
]
111190988 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
amex04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
111190988 (pdlim5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
PDZ_6
DUF4749
PDZ_2
Motif
Other DBs
NCBI-GeneID:
111190988
NCBI-ProteinID:
XP_049326660
LinkDB
All DBs
Position
22:complement(12632904..12653598)
Genome browser
AA seq
457 aa
AA seq
DB search
MSTNYSVELQGPAPWGFRLSGGKDFNLPLTISRLTDSGKAAKAGVGVGDMVITIDGLSTE
NLNHLEAQNKIKACSGNLKLTMQRVVHVPKPAEAPKANTVATISPAGVSKPPVNNPRAGL
SKPPVNRMPRVPITQTDIGFYHIPTHADYSRKRIMEDTEDWRPRTGTSQSRSFRILAQMT
GTEDEGVRSEEVESDKKSVNEVQECELRAHVRSPVKTMMKGCRSPVKNQAGLINPTFGSG
SNSPPLGPALDQPLPRPHPKDEVSLVQRAEHVPAGARTPVCVHCDSIIRGPFLMVMGSAW
HREEFVCVQCGECLGEQGFVEDEGSVYCTHCYQLYLAPTCSRCSHKILGEVINALKQTWH
VYCFLCASCQQPIRNNTFHLEDGEPYCEKDYYGLVGAGCHGCDFRIEAGDKFIEALGFTW
HDTCFVCAVCSCSLEGQEFFSKKDRPLCRKHASPSAL
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgagcactaattacagcgtggagctgcaaggccccgccccctggggcttcagactgtcg
gggggcaaagacttcaacctacccctcaccatctcacggttaacagacagtggtaaggca
gctaaggcgggcgtgggcgtgggagatatggtgatcaccatcgatggtctgagcactgaa
aacctgaatcacctggaggctcagaacaagatcaaagcctgcagcggaaacctcaaactt
accatgcagagggtggtacatgttccaaaacctgctgaagcaccaaaggcgaatacagtg
gcgacaatttctcctgctggtgtcagtaaacctccagttaacaatcctcgtgctggtctc
agtaaacctccagtaaacaggatgccgcgtgtgcccatcactcagactgatatcgggttc
taccacattcccactcacgctgattacagcaggaaacgcatcatggaggacacggaggac
tggaggccgaggacggggacgtcccagtcccgctccttcaggatcctggcccagatgacc
gggaccgaggatgagggggtccgatcagaggaggtggagtctgataagaagtcagtaaat
gaggtgcaggagtgtgagctgagggctcatgtgaggtctccagtaaagacgatgatgaaa
ggctgcagatctcctgtaaaaaaccaagcaggtctgattaaccccacttttggatccgga
agcaacagtccaccattaggccctgccctggaccagcctttgccccgcccacatcccaaa
gatgaagtgtcattggtccagagagcggaacacgttcctgcaggagctcgaactccagtg
tgtgttcactgtgactccattatacggggtccgttcctgatggtgatgggtagtgcgtgg
cacagggaggagtttgtgtgtgtgcagtgtggggagtgtttgggggagcagggcttcgtg
gaggacgagggcagtgtgtactgtactcactgttaccagctctacctcgcaccaacctgc
tcacgctgctcgcacaagatactgggggaagtgattaacgctctgaagcagacgtggcat
gtgtactgcttcctgtgtgcgtcgtgtcaacagccaatcagaaacaacaccttccacctg
gaggacggagagccgtactgtgagaaagattattatggtctggttggagctggttgccat
ggatgtgatttccgaatagaggcgggggataagttcatagaggctctaggcttcacctgg
cacgatacctgctttgtgtgtgcagtgtgcagctgcagtctggagggtcaggagttcttc
agtaagaaagatcggccgctctgtaggaaacacgccagcccctcagcactctga
DBGET
integrated database retrieval system
