Astyanax mexicanus (Mexican tetra): 111195219
Help
Entry
111195219 CDS
T05042
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111195219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
111195219
03016 Transfer RNA biogenesis [BR:
amex03016
]
111195219
Enzymes [BR:
amex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
111195219
Messenger RNA biogenesis [BR:
amex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
111195219
Transfer RNA biogenesis [BR:
amex03016
]
Prokaryotic type
tRNA degradation factors
111195219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
KH_KRR1_2nd
Motif
Other DBs
NCBI-GeneID:
111195219
NCBI-ProteinID:
XP_022537599
Ensembl:
ENSAMXG00000042321
LinkDB
All DBs
Position
25:complement(16158425..16172911)
Genome browser
AA seq
770 aa
AA seq
DB search
MRFLLRLGVSAARLNARFCHRSVWASHGTERRAAVDLGEGRKLQISSGKLARFADGCSVV
QLGETSVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRRELGTTDFEILTSRL
IDRSIRPLFPAGYFYDTQVLCNILAVDGVNDPDVLAINGASAALALSDIPWNGPIGAVRI
GLVGEEFIVNPTRREMSSSKLNLVIAGAPCSQVVMMEAAAENILQQDFCHAVKLGVKHTQ
QIIHAIQQLAREQKVVKRTPSRLFTAPPEMVEHARQLASKRVYAVFTDFSHDKVSRDEAI
NKVRLDTEEKIKEKFPQAESYEVIESFDTVSKEVFRNLILNEYKRCDGRDLTSLRDISCE
VDIFKPLHGSALFQRGQTQVLCSVTFDSIESSVKPDVITTALSGIKGKNFMLHYEFPPYA
TNETGKMGGMNRRELGHGALAEKALRPVIPEDFPFTIRVTSEVLESNGSSSMASACGGSL
ALMDAGVPISSAVAGVAVGLISKPNPQKVSDIEDYRLLTDILGIEDYNGDMDFKMAGTNK
GITALQADIKIPGLPLKIVMEAIQQATVAKREILGIMNKTISKPRVSRKENGPLVEKVRV
PVTRRARFVGPGGHNLRRLQAETGVTISQVDEETFSVFAPTPNAMNEAQEFITEICKDDQ
EQQLEFGAIYTATITELRDIGVMVKLYPNMTPVLLHNSQLDHKRIKHPSALGLEVGQQIQ
VKYFGRDPTDGRMRLSRKVLHSPTATVVKTLNDKQSITMGTTHGLSETSP
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgaggtttcttctccggctgggtgtttctgcggcccggctgaacgcgcggttctgtcac
cggagcgtgtgggcgagccacggcactgagaggcgggctgcggtggatttaggggaggga
agaaaacttcaaatatcatctgggaagcttgccagatttgctgatggatgttctgttgtt
cagctgggagagacatcagtgatggtcacagctgtcagcaagacaaaaccatcaccgtcc
caatttatgccccttgtggttgattacaggcagaaagcagcagctgctggaagaattccc
acaaactacttgcggagagaactgggcacaactgactttgaaatcctcaccagcaggcta
atagaccgctccatcagacctctctttcctgcgggttacttctatgatacacaggttttg
tgcaacatattggctgttgatggtgtcaatgacccagatgtgcttgcaatcaatggagca
tccgctgccctcgccctctctgacattccttggaatgggcctattggtgcagtgcgcatt
ggtcttgtaggtgaagagtttattgtaaatccgactcggagggaaatgagctccagtaaa
ctgaacctggtgattgcaggagctccttgcagccaagtggtgatgatggaggctgctgca
gagaatatactgcaacaggacttctgtcatgctgtgaagctgggagtaaaacacacccag
cagatcattcatgccatccagcagctggccagagagcagaaggtggtgaagcgcacaccg
tccagactcttcaccgcaccccccgagatggtggaacatgctcgacagctggccagtaaa
agagtctatgctgtctttacagacttttcacatgacaaggtttccagagatgaagccata
aacaaagtacgacttgacacagaggaaaaaattaaagagaagttccctcaagcagagtct
tatgaagtaatcgagtccttcgacacagtgtctaaagaggtcttccgtaacctaatactt
aacgaatataaaaggtgtgatggaagagacctgacgtctttaagagatatttcatgtgaa
gtggacatatttaagccactgcatggctctgcactgtttcagaggggtcaaacccaggtg
ctttgcagtgtaacattcgactccatagagtccagtgtaaaaccagacgtcataaccaca
gctctgagtgggattaaaggcaagaatttcatgcttcactatgagtttcctccctatgca
acaaacgagactgggaagatgggtggaatgaacagaagagagcttggtcatggggctttg
gcagagaaagccttgaggccggttattcctgaagactttcccttcacgatacgagtgacc
tcagaggtgctggagtccaatgggtcctcatctatggcgtctgcatgtgggggcagcctg
gctctaatggatgcaggtgtcccgatatcttcagcagtggctggtgttgctgttggtcta
atatctaagcccaaccctcagaaagtctctgacattgaggactacagattattaactgac
attttgggaattgaggattacaatggagacatggactttaaaatggctggaacaaacaag
ggaatcacagctttacaggctgatattaagattccaggtcttcctctaaagattgtaatg
gaagctatacagcaggcaacagtggccaagagagagattttgggcattatgaataaaacc
atttctaaaccaagagtttcccggaaggagaatggtccacttgttgagaaagttcgagtg
cctgtgacaagacgagctcgctttgttggtcctggaggtcataatctccgtagattacaa
gccgaaacaggtgtaacaataagccaagtagatgaggaaaccttctcagttttcgctcca
acaccaaacgctatgaatgaagctcaggagttcatcactgagatctgcaaggatgatcaa
gaacagcagcttgaatttggtgccatatacacagccaccatcacagagttaagggacatt
ggtgtcatggtgaaactgtaccccaacatgactccagtgcttcttcataactcacagctg
gatcataaacggatcaaacatcccagtgctcttggattagaggttggtcaacaaattcag
gtgaaatattttggacgtgacccgacagatggaaggatgaggttgtctcgtaaagtgctt
cattctcctacagccacagtggtgaagactcttaatgacaaacagagtatcactatggga
acaacacacggcctgtctgagacttccccctga
DBGET
integrated database retrieval system
