Astyanax mexicanus (Mexican tetra): 125781273
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Entry
125781273 CDS
T05042
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03420
Nucleotide excision repair
amex03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
125781273 (ercc4)
03460 Fanconi anemia pathway
125781273 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amex03032
]
125781273 (ercc4)
03400 DNA repair and recombination proteins [BR:
amex03400
]
125781273 (ercc4)
DNA replication proteins [BR:
amex03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
125781273 (ercc4)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
125781273 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
Motif
Other DBs
NCBI-GeneID:
125781273
NCBI-ProteinID:
XP_049320837
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All DBs
Position
15:24147305..24156421
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AA seq
900 aa
AA seq
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MAGSLLEYETEMFLSLFSSDGLLVCAEGLGIDRILLQFMKVYSEEGSLVLLLNTTIPEQE
YFTEQLRAEGVSHLPQTVTSDVQSSERYNVYTQGGVLFVTSRILVVDFLTDKIPAHLISG
ILVYRAHKIIESCQEAFILRLYRQKNKTGFIKAFTDKATAFSTGFCQVERVMRNLFVKKL
FLWPRFQASVNTVLERHKPDVVELHVSLTPAMRTIQSSILDIMNACLKELKRYNPTLEAE
DLSLENTLGNAFEKTIRHYLDPLWHQLGVKTKSLVQDLKILRTLLLYLTQYDCVTFLNLL
ESLRSSQKNFGSNSGWLFLDSSTSMFVNARSRVYRIPESKKKLKVGEVDQKTSASAPLKR
ELVLEKNPKWEALTEVLQEIEKENSSSEHEPGRVLICASDDRTCAQLKEYIQSGADALLS
RLYFRTIGKDEPPPALDKAKTGSGWSRKDAGKSSKGKKPKAKPAKPKAKKQRASLTLTQM
VGHEKDGEMEQMGSSGDEGGPEDMEEEEAEEEEEILLNLSSDFYYGILKEPLTVIHPLKG
CTDPYSLTRVLQEVEPMFVVLYDAELSFVRQLEVYKASRPGKPLRVYFLIYGGSTEEQKY
LTALCKEKQAFEHLIREKATMVVPEEREGREDTNLDLVRNPEPANATTNTRKAGGQEVVK
EPSRVIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTSEICVERKSVSDLIGSLQSG
RLYTQCLSMNRYYRRPVLLIEFDPAKPFSLVARSDLRQEISANDITSKLTLLTLHFPRLR
LLWCPSPHATAELFQELKRGRPEPDAEVAQAITAESDTVEESADLYNPGPYDLLLRMPGV
NVKNFRGLIKHAASLAELLTLSQEKLTDILGSSSNARQLYEFLHNTMDVASVQKNKNTSK
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atggcggggtctctgctggagtatgagactgagatgtttctgagtctgttcagctcggac
gggctgctggtttgtgctgaaggtctggggattgaccggattctgttgcagtttatgaag
gtttactctgaggaggggagtctagtcctgctgctcaacaccacgattcctgaacaggaa
tacttcacagagcagttgagagcagaaggagtgagtcatcttccccagaccgtgaccagt
gacgttcagagcagtgagcgctacaatgtctacactcagggaggtgtcctgttcgtcacc
agccgcatcttggttgtcgacttcctcactgacaagatccctgcacacctcatctcagga
attctggtctaccgtgctcataagatcattgagtcctgccaagaggccttcattctcaga
ctgtaccggcaaaagaacaagactggcttcatcaaggctttcactgacaaggccacagct
ttctccaccggcttttgtcaagttgagcgagttatgaggaacctttttgtgaagaaactc
tttctctggcccaggttccaggcctctgtgaacacggtgctggaaagacacaagcctgat
gtggtggagctgcacgtgtctctgactccagctatgaggaccatccagagctccattctg
gatataatgaatgcctgcctgaaagagctcaagcgctacaatccaacactggaggcggag
gacctctctcttgagaacacgcttggcaatgcctttgaaaaaacgattcggcattacctt
gaccccctgtggcatcagctgggggttaagaccaaatctctggtgcaggatctgaagatt
ctacgcaccctgctgctctacctcacccaatacgactgtgtcacattcctcaacctgctc
gagtccctgcgctccagccagaagaactttggcagtaactcagggtggctgttcctggac
tcgagcacttctatgtttgtgaatgcccgcagccgcgtgtatcgcattccggagtcaaaa
aagaagcttaaagtgggtgaagtggaccagaaaacaagtgcctccgcccctttgaaaaga
gagcttgtgctggagaaaaacccaaagtgggaagctttgacagaagttctccaagaaatc
gagaaggaaaacagcagctctgaacatgaaccaggtcgtgtgctgatatgtgctagtgat
gaccggacgtgtgctcagctaaaggagtatattcagagtggagcagacgctctactcagt
cgtctttactttcgcacaattgggaaagatgagcctccaccagcactagataaagctaaa
acaggtagcggctggtccaggaaggatgctgggaaatcctctaaaggcaaaaagccgaaa
gccaaacctgccaaacccaaagcaaagaaacagagagcgtccctgaccctcacgcaaatg
gtggggcatgaaaaagacggtgaaatggaacagatgggcagcagtggggatgagggagga
cctgaagacatggaggaggaagaggcagaagaggaagaagaaatacttctgaatctttcc
tcagatttctactacggcattctgaaggagcccttgaccgttattcatccactgaaaggg
tgcactgacccgtacagtctgacacgagtgctgcaggaagtggagcccatgtttgtggtg
ctgtatgatgctgagctcagctttgtgcgccagctggaggtttacaaagccagcaggcca
ggaaaacctctcagggtgtattttctcatctatggtggctcaacagaagagcagaagtat
ctgacagccctgtgtaaagagaaacaagcattcgaacatctgataagggaaaaggccaca
atggtggttccagaggaaagagaaggcagagaggacacaaacctggacctggtccgcaac
ccagaacctgctaatgctaccaccaacactcgcaaagcaggtggacaggaggtggtgaag
gagccgtctcgagttatcgttgatatgagggagttccgcagcgagctcccgtcactgctg
caccggcgagggctggatatcgagcccgtaacgctggaggtgggtgattacatcctaaca
tctgagatctgcgtggaaagaaaaagtgtgagcgacctgattggctcgctgcagagcggt
cgcctgtacactcagtgcctctcaatgaaccgctactaccgcagacccgtgctactcatc
gagtttgatccggccaagcctttctctctggtagctcgcagcgacctgcggcaggagatt
tcagccaatgacatcacctccaaactgaccctcctcaccctgcatttcccccgcctcaga
ctgctgtggtgtccctccccgcacgccactgcggagctctttcaggagctgaagcgtggc
cgtcctgaaccagacgccgaagtcgcccaggccatcacagcagagtcggacacggtggag
gaatctgctgatctttacaaccccgggccttatgacctgctgctgcgcatgcccggagtc
aatgtcaaaaacttcagggggctcatcaaacacgcagccagcctggctgagctgctcact
ctgagccaggagaagcttactgacattctgggcagcagcagcaatgccaggcaactgtac
gagttcttacacaacaccatggatgtagcttcagttcagaagaacaagaacacttcaaag
tga
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