Astyanax mexicanus (Mexican tetra): 125806034
Help
Entry
125806034 CDS
T05042
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04510
Focal adhesion
amex04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125806034 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125806034 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amex00536
]
125806034 (col2a1a)
Glycosaminoglycan binding proteins [BR:
amex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125806034 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Amnionless
SNARE
TILa
Motif
Other DBs
NCBI-GeneID:
125806034
NCBI-ProteinID:
XP_049341455
LinkDB
All DBs
Position
12:complement(42801888..42839308)
Genome browser
AA seq
1492 aa
AA seq
DB search
MFRFVDSRTVLLLAATQFVLLAVVRGQREDDQELGGCIQDGIHYEDRAVWKPEACRVCVC
DSGAVLCDEVICEEMRDCANPIIPPGECCPICPADQDLQSETFGAKGQKGEPGDISDVVG
PRGPAGPMGPPGEQGLRGDRGAKGEKGTPGPRGRDGEPGTPGNPGPPGPPGPPGPNPPGL
GGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEAGEPGP
SGPIGPRGPPGPSGKPGSDGEAGKSGKPGDRGPPGPQGARGFPGTPGLPGIKGHRGHPGI
DGAKGETGAAGSKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGP
PGPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGI
PGAKGSAGGPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGV
AGPQGAPGPSGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGV
AGLTGPKGATGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGA
RGQPGVMGFPGPKGANGEPGKGGEKGLVGSPGLRGLPGKDGETGAAGPPGPAGPAGERGE
QGQPGPSGFQGLPGPAGPPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGSAGPQGL
QGPRGLPGTPGTDGPKGAIGPAGAGGAQGPPGLQGMPGERGPSGISGPKGDRGDSGEKGP
EGAPGKDGSRGLTGPIGPPGPSGPNGAKGETGAIGPTGPIGARGAPGDRGEVGPPGPAGF
AGPPGADGQPGLKGEQGEGGQKGDAGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGA
TGFPGAAGRVGPPGPNGNPGAAGPAGPSGKDGPKGVRGDAGPPGRAGDAGLRGAPGVPGE
KGEPGEDGPPGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGD
RGPPGPVGPPGLTGPAGETGREGTPGSDGPPGRDGAPGVKGERGNTGPIGAPGAPGAPGA
SGPVGPVGKQGDRGENGPQGPAGPPGPAGARGMAGPQGPRGDKGEAGEAGERGQKGHRGF
TGLQGLPGPPGPSGDQGASGPSGPSGPKGPPGPVGPSGKDGSNGLPGPIGPPGPRGRSGE
SGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLSQTEKAPDPLRYMRADEASASLRQHDVEV
DATLKSINSQIEDIRSPDGSRKNPARTCRDLKLCHPEWKSGDYWVDPNLGSTIDAVKVFC
NMETGESCVYPSNPTIPRKNWWSSKSKTSKHVWFGESMGGGFHFSYAENGQIASAANIQM
NFLRLLSSEASQNITYHCKNSVAYMDQATGNLKKAVLLQGSNDVEIRAEGNSRFTYAVLE
DGCKKHTGQWGKTVIEYKTQKTSRLPIVDIAPMDIGGANQEFGVDIGPVCFL
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgttcagatttgtggattcacggactgtcctgcttcttgcagcaacgcagtttgtttta
ctagccgtggtcagaggccagcgggaggatgaccaggagttaggtggctgcatccaagat
ggcatccactatgaggaccgtgcagtatggaagccggaggcgtgtcgcgtctgtgtgtgc
gactcgggggccgtgctgtgtgatgaggtcatctgcgaggagatgagggattgtgccaat
cccatcatcccacctggagaatgctgccccatctgccccgccgaccaggacctgcaaagc
gagacattcggtgctaagggacagaaaggagaacctggcgatatctcagatgttgtagga
ccaagaggacccgctggacccatgggacccccaggagaacaaggcctacgtggagataga
ggagctaaaggcgagaagggaactccaggacccagaggcagagatggtgagcccggcact
ccaggcaaccccggaccccctggacctcccggcccaccaggccctaacccacccggcctt
ggaggaaactttgcagctcagatggctggtggctttgatgagaaagcaggaggagctcag
atgggtgtgatgcaaggaccaatgggccccatgggtccccgtggcccccctggccccact
ggagcacctggcccacaaggattccaaggcaaccccggagaggctggagaacccggacct
tctggccctattggaccacgtggcccacctggaccatctggaaaacctggaagtgatggt
gaggctggcaaatctggcaaacctggcgaccgtggacccccagggcctcagggagctcgt
ggattccctggaactcctggacttcctggcatcaagggacacagaggacacccaggtatt
gatggagcaaagggagagactggagctgctggatctaagggtgaagctggtgctcctggt
gagaatggcgctcctggaccaatgggccctcgtggtctgcccggtgagagaggacgtcct
ggaccttctggagctgctggtgcccgtggtaatgatggtcttcctgggcctgctggtcct
cctggtcccgttggtcctgctggtgccccaggtttcccaggatctcctggttccaagggt
gaggccggtcccactggagctcgtggacctgagggagcacagggaccccgtggagagagt
ggtacacctggttctcctggacctgctggtgcctctggcaaccctggtactgatggtatt
cctggagccaaaggatctgctggcggtcctggtattgcaggtgccccaggtttccccgga
ccccgtggaccaccaggacctcagggagctactggacctcttgggcctaagggacagagt
ggagaccctggtatcccaggattcaagggagaggctggaccaaaaggagagcgtggtgta
gcaggacctcagggagctccaggcccatctggagaggagggtaagagaggacctagagga
gagcctggtgctgctggcccactcggaccccctggagagagaggagctccaggtaaccgt
ggattccctggacaggatggtcttgctggtgctaagggtgcacctggtgaccgtggtgtt
gctggattgactggacctaaaggtgccactggggatcctggccgtaccggagagcctggt
cttcctggagccagaggtcttactggccgccctggagatgctggaccccaaggaaaagtt
ggcccatctggtgcccctggtgaggatggtcgccctggtccccctggtcctcagggagct
cgtggacagcctggtgtgatgggattccctggtcctaagggagccaatggtgagcctggc
aaaggtggtgagaaaggacttgttggcagccctggactcagaggattgcctggtaaagat
ggtgagactggagctgctggtcctcctggccctgctggacctgctggagagagaggagag
caaggacagcctggaccttctggattccagggtctgcctggacctgctggaccacctgga
gagggcggcaaacctggtgaccagggtgttcccggagagggtggtgcccccggagctgtt
ggaccaagaggtgagcgtggattccctggtgagagaggaagtgctggacctcagggtctt
cagggaccaagaggacttcctggaactcctggaactgatggacctaagggtgcgataggc
ccggctggtgctggtggtgctcagggacctcctggcctgcagggaatgcctggtgagaga
ggaccatctggtatctctggacctaagggtgatagaggtgacagtggagagaagggacct
gagggagctcctggcaaagatggttcaagaggtttgactggtcctattggcccacctggt
ccttctggccccaacggagctaagggtgaaactggtgctattggaccaactggacctatt
ggagctcgtggtgcccctggtgatcgtggtgaggttggacctcctggccctgctggattt
gctggaccccctggagctgatggtcagcctggacttaagggagagcaaggagagggtgga
cagaagggagatgctggatcccctggacctcaaggaccctctggagcacccggcccagtt
ggcccaactggtgtgtctggacctaaaggagctcgtggagcacagggagccccaggtgct
actggtttcccaggtgctgcaggaagagttggaccacccggccccaatggtaaccctggt
gctgctggcccagccggtccttctggtaaagatggtcctaagggagtgcgtggtgatgct
ggccctccaggaagagcaggagatgccggtctgcgtggagcacctggagtccctggagag
aagggagagcctggagaggatggtccccctggtcctgatggtccttccggtcctgcaggt
cttgctggtcagcgaggtattgttggtctgcctggtcagcgtggtgagagaggtttccct
ggtcttcctggaccttctggtgaacctggcaaacagggagctcctggtggaagcggtgac
cgtggaccccctggccctgttggaccccctggattgactggacctgctggagaaactgga
cgtgagggaactcctggatctgatggtcctcctggcagagatggtgctcctggtgttaag
ggtgagcgtggtaacactggtcccattggtgctcctggtgctcctggtgcccctggtgct
tctggtcctgttggtcccgtaggcaaacagggagacagaggagagaatggaccacaagga
cctgctggaccccctggacctgctggagctagaggcatggctggaccccaaggaccacgt
ggagacaagggagaggctggtgaggctggagagagaggacagaagggacacagaggattc
accggacttcagggacttcctggacctcctggtccttccggagaccagggtgcttctgga
ccttctggacctagtggacctaagggaccccctggacctgttggaccttctggaaaagat
ggatcaaacggtcttcctggacccatcggaccccctggacctcgtggacgctctggagaa
tctggcccagctggtcctcccggaaaccctggaccccctggtcctcctggtcctccaggc
cctggcattgacatgtctgccttcgccggactctctcagaccgagaaggctcccgatccc
ctgcgctacatgcgtgccgacgaggcctctgcttctctgagacagcacgatgtggaggtg
gacgccaccctgaagtccatcaacagccagatcgaggacatccgcagccctgacggctct
cgcaagaaccctgcccgcacctgccgcgacctcaaactctgccaccctgaatggaagagc
ggtgactactgggtggatcccaaccttggcagcactattgatgccgttaaggtgttctgc
aacatggagactggcgagtcctgtgtataccccagcaaccccactatcccacgcaagaac
tggtggagcagcaagagcaagacatccaagcacgtgtggttcggagagagcatgggaggt
ggcttccacttcagctatgctgagaacggccagattgcaagcgctgccaacattcagatg
aacttcctcagactgctgtccagcgaagcctctcagaacatcacctaccactgcaagaac
agcgtggcctacatggaccaggccaccggcaacctgaagaaggctgtcctgctgcagggc
tccaacgacgtggaaatcagagcagagggcaacagccgattcacatacgctgtgctggag
gatggctgcaagaagcacacaggccagtggggcaagactgtgatcgagtacaaaactcag
aagacatctagactgcccatcgtggacattgctccaatggacatcggtggagctaaccag
gagtttggagtggacattggaccagtctgcttcttgtaa
DBGET
integrated database retrieval system
