Astyanax mexicanus (Mexican tetra): 125806215
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Entry
125806215 CDS
T05042
Name
(RefSeq) helicase ARIP4-like isoform X1
KO
K10876
RAD54-like protein 2 [EC:5.6.2.-]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amex03400
]
125806215
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
125806215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
125806215
NCBI-ProteinID:
XP_049342163
LinkDB
All DBs
Position
12:complement(10130865..10187867)
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AA seq
1415 aa
AA seq
DB search
MLLLDESDSLTDQGQSAAFSSENEAQGGDSSGWPCALPSTSPSGETPGQPSAHLPSRPDA
HSRALALSATKKRSSKPAHMRRNIRKLLKEHQLDAVTKAAQLEEIERRKRLEHQRKDFTV
EALPDYTHTAANVCVSAAQREIKLRAVCVETSTSSTTDSTKGTLQTAAPKQDQSSGENTA
SYIVPESSSTNEDAESTATGESSGAHVNDALNQPDAQGRVLINVNHPADESDLYLSPQLA
RAVKPHQIGGIRFLYDNLVESMERFKSSSGLGCILAHSMGLGKTLQVISFIDILLRHTGA
HSVLAIVPVNTLQNWLAEFNLWLPPPEALPPKTDPAYILPRTFKVHILNDEHKTTSTRAK
VVEDWYRDGGVLLMGYEMYRLLSLKKSFVAGRKKKNKKPSGPAIIDLDEEDRHQELLKGI
EQALSQPGPDVVICDEGHRIKNCHASTSQALKGIHTRRRVVLTGYPLQNNLLEYWCMVDF
VRPDFLGTRQEFSNMFERPILNGLCVDSTAQDVQLMRYRSHVLHSLLEGFVQRRGHDVLR
SQLPEKQEHIILVRLSALQRALYTEFMNRFREAGNTGWLSLNPLKAFCVCCKIWNHPDVL
YEALQKENLASEQDLDLDDITTSSAQCSVTNQKGKPADSANSEGGLSLTQLQEKANQVIT
YEWAKEIMAGYKTGILENSAKMVLLFHIIDESVRKGDKILVFSQSLSTLTVIEEFLAKRP
VPDQSENGLKQPWVRNVNYYRLDGSTSVSERERLINQFNDPTNTSAWVFLLSTRAGCLGV
NLIGANRVVVFDASWNPCHDAQAVCRVYRYGQHKPCHIYRLVCDFTLEKKIYDRQISKQG
MSDRVIDDLNPVLTFTRREVESLLHFVEEEPDPTESSRLLRPQEDMEAVIRKACLRYPHL
ITRQPFFHESLLMDRRDLKLSSEEKQAAKKSYEEEKRASVPYTRPSYAHYYPASDQSLTN
IPAFSQRNWRPPPRPEDKPMTSVHPAKATPAPKIPRQTEQIPTPSSTTSGSKPTVNFPVT
YLQKAGVFVQKIVTTTDIVIPGTNSSSDMQTTISAGESIHVIRGTKGTYIRTSDGRIFAI
RAAGKVKQAEDSTTTKREVSAPLETSMDTGTNGSVSPDHKVPTVITPEAVARPLSPDGPE
IVSELQRYTKAQSPSPPPSGKAIPEKASEMGVIKILPQKVITSPCTEAPLDLRGTKRKSA
SPLSNEHSSKQLAAENRGSAPPPAHSYPFPGGYGLNPGLNPTLNPTLLSMWSSYFQSHAP
FGEPRLMFPVSADAYSSGGGPLPRSSPPLSSSSSSSSTITSSATATASSSSSSSSSSSSF
TVPPAFLMRPGVPSVLPPGFSLPYRQPMGMYPQLLLSGGLSAATPGPAGSSFLPPYTSTS
PRGSAHEFHLAAENGAEGDEHACNNDDDVIEVMGQ
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgctcttgctggacgagtccgactctctaacagatcagggccagagcgctgcctttagc
tctgagaatgaggcacagggcggtgactcttcgggatggccctgcgctctcccctctacc
tccccctccggcgagacccctggccagccctccgctcacctcccgtcccgcccggacgcc
cacagccgcgccctcgccctcagcgctaccaagaagaggagctccaaacctgctcacatg
aggaggaacatcaggaaactgttgaaggagcaccagttggatgcagtgactaaagcagct
cagctggaggagatcgagagaaggaagcgcctggagcatcagaggaaagacttcactgta
gaagctctgcctgactacacgcacacagcagctaacgtgtgtgtgagtgcagctcagcgt
gagattaagctcagggcagtgtgtgtggagacgagcaccagcagtaccacagacagcact
aaaggaaccctgcagacagctgctcccaagcaagaccaaagctcaggtgagaacaccgcc
tcgtacatcgtgcccgaatcatcatcgaccaatgaggacgcagagtcgacggccactggg
gagagcagcggagcacatgttaacgacgcactcaaccaaccagacgctcaggggcgtgtc
ctcatcaacgtcaatcacccagcggatgaaagcgacctctacctctcccctcagctcgcc
cgcgccgtcaaaccccaccagattggtggtattcggtttctgtatgataatctggtggag
tctatggagcggtttaagagcagctctggtctgggctgtatcctggctcacagcatgggc
ctgggtaaaactctacaggtcatctccttcatcgacatcctcctgcgccacaccggagcg
cacagcgtgctcgccatcgtccctgtgaatacgctgcagaactggttggctgagtttaac
ctgtggctcccgccccctgaagccctgccccccaaaactgaccctgcctacattttgcct
cgcacttttaaggtgcacatcctcaatgacgagcacaagaccacatccacccgcgcgaag
gtggtggaagattggtacagagatggcggtgtgctgctaatgggttatgaaatgtaccgc
ctgctctcactgaagaaaagctttgttgctgggagaaagaagaagaataagaagccgagt
ggacctgccattattgacctggatgaggaggaccgccaccaggagctgctgaaaggcatc
gagcaagctctctctcagcctggtccagacgtggtcatctgtgacgaaggccaccgcatt
aaaaactgccacgccagcacctcacaggctctgaagggcatccacacaagacgcagggtg
gtgctgaccggctacccgctgcagaacaacttgctggagtactggtgcatggtggacttc
gtgcgacccgacttcctgggcacgcggcaggagttcagcaacatgttcgagaggcccatc
cttaacggcctgtgtgtggacagcactgcacaagacgtccagctcatgcgctaccgcagc
cacgtgctgcacagcctgctggaagggttcgtccagaggcgtggacacgacgtgctgcgc
tcccagctgccagagaagcaggagcacattatcctggtgcgtctgtcagctctgcagagg
gcgctatacacagagttcatgaaccgcttcagagaggctggcaatactggctggcttagt
ctgaaccccctcaaagctttctgcgtctgctgcaagatctggaaccatcctgatgtcctg
tatgaagctcttcagaaggagaatctggccagtgagcaagacctggatctggatgacatc
accacaagcagtgcccaatgctcggtgaccaatcagaagggcaagcctgcagattcagcc
aatagcgaaggagggctgagtttaactcagcttcaggagaaagccaatcaggttatcaca
tatgaatgggcgaaagagattatggcaggctataagaccggcatcctggagaattcagct
aaaatggtcctgctgtttcacattattgatgaaagcgtcaggaaaggagacaaaatctta
gttttcagccagagtctgtccactcttacagtcatcgaagagttcctcgccaaaaggcca
gttcccgaccagagtgaaaacggactcaagcagccctgggtccgcaatgtcaactactac
agactggatggcagtacttcagtgtcagagcgagagaggcttatcaaccagtttaatgac
ccaacaaacacctcggcttgggtttttctgctgtctaccagagccggctgcctaggtgtg
aacctgattggtgcaaatcgcgtggttgtgttcgacgcctcgtggaacccatgccacgac
gcccaggctgtttgccgcgtgtatcgctacgggcagcacaagccgtgccacatctacagg
ctagtgtgcgacttcaccctggagaagaaaatctacgaccggcagatctccaaacagggg
atgtctgatcgagtgatagatgacttgaatcccgttctgaccttcactcgtcgggaggtg
gagtctctgctgcacttcgtggaggaggagcctgaccccacagagtcttctcgcttgctc
cgcccacaggaagacatggaggcagtcataaggaaggcctgtctgagatatccccatctc
attaccaggcaacccttcttccacgagtccttactgatggaccggcgtgacctcaaactg
tccagcgaggaaaagcaggcagccaagaaaagctacgaggaggagaagcgggcgtctgtg
ccctacacgcgtccgtcatacgcgcattactacccagccagcgaccaaagccttaccaac
atccctgccttcagccagaggaactggcgtcctcctccacggccagaggataagccaatg
accagcgttcatccagcgaaagcaacaccagctcccaaaatcccacggcagacagagcag
atccccaccccctcttcgacgacgtccggctccaaacccaccgtcaacttccccgtcacc
tacctgcagaaagctggagtgtttgtacagaagattgtcaccaccacagatattgtgatt
cctggtactaacagttcctcagacatgcagaccacgatcagtgcaggagagagcattcac
gtcatcagaggaactaaaggaacctatattcggacaagtgatggaaggatctttgctatc
cgtgcagctggaaaagtcaagcaagcagaggatagtacaaccacaaagagagaagtctca
gctccactggagacatccatggatactggcaccaatggcagcgtgtcgcctgaccacaaa
gtgccaacagttatcacaccagaggccgtggccagacccctctccccagatggcccagag
attgtgagcgagcttcagcgatacaccaaagcccagtccccaagcccaccgccctcagga
aaggccattccagaaaaagcctcagagatgggcgttatcaaaattctgcctcaaaaagtc
attacctcaccttgcactgaagcacctctggacctgcggggcaccaagcgcaaatctgca
tcacctctaagcaacgagcactcctctaagcaactggctgcggagaaccgaggttctgct
ccacctcctgctcacagttacccgttcccgggtggctatggcttaaatcctggtctcaac
ccaactttaaaccccaccctcctgagcatgtggtcatcctacttccaatctcatgccccg
ttcggcgagccccgcctcatgtttcccgtctctgctgatgcttatagttcagggggtgga
cctttgcccagatcctcccctcccctatcctcctctagcagcagcagcagcaccattacc
tctagtgccacagctactgcctcctcctcttcctcctcctcttcttcttcttcctctttc
actgttcctcctgcgttcctgatgaggcctggggtaccttcagtgctgcctcccgggttc
tctctgccctacagacagcccatgggtatgtatccccaactgttgctgtctggagggctg
tcggcagcaacgccagggcctgccggctccagtttcctgcctccctacacttccaccagc
cctcgaggcagcgctcatgagtttcacctggctgcagagaacggcgctgagggcgatgag
catgcttgcaataacgacgatgatgttattgaggtgatgggccaatga
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