Anaplasma marginale Florida: AMF_112
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Entry
AMF_112 CDS
T00855
Symbol
ligA
Name
(GenBank) DNA ligase (ligA)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amf
Anaplasma marginale Florida
Pathway
amf03030
DNA replication
amf03410
Base excision repair
amf03420
Nucleotide excision repair
amf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMF_112 (ligA)
03410 Base excision repair
AMF_112 (ligA)
03420 Nucleotide excision repair
AMF_112 (ligA)
03430 Mismatch repair
AMF_112 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amf03032
]
AMF_112 (ligA)
03400 DNA repair and recombination proteins [BR:
amf03400
]
AMF_112 (ligA)
Enzymes [BR:
amf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMF_112 (ligA)
DNA replication proteins [BR:
amf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMF_112 (ligA)
DNA repair and recombination proteins [BR:
amf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMF_112 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMF_112 (ligA)
MMR (mismatch excision repair)
DNA ligase
AMF_112 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMF_112 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
Nlig-Ia
PTCB-BRCT
Zn_ribbon_NUD
RNA_lig_T4_1
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ACM49000
UniProt:
B9KHN8
LinkDB
All DBs
Position
complement(129262..131283)
Genome browser
AA seq
673 aa
AA seq
DB search
MLEQARRRLAGLNAKLRHHDMLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDDYA
DVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCELKM
DGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQLDSAPEVLEVRGEIYMHH
EDFEKLRGSCNFANPRNAAAGSIRQLNQKIVEERNLSYVAYSAVNSTFATQQEILKQLDE
WGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSINFQKLLGATGKSPR
WAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRASLHNLNEIERKD
VRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPSHCPSCGSKLHREPGEVALRCVA
ELSCKAQALERVKHFVSRDGLNIMGLGAKQIEFFCNHGLIGSIADIFSLEEKLHGINLDT
EHGWGEKSVANLIAAIRNSATVRLSNFIFALGIRFIGVGAAKLIAEHYRSYKNWHQAMLA
LTETHDTVQIRGLGEKSISSLKAFFSVQGNLEVLESLSAKLNILDEASPAQRGSSAISGK
TVVFTGTLESMSRTEAKLQAESLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVID
EQTWVKMVEDARS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgttggagcaggctaggcgcaggttggctggtctgaatgcgaagctccgccaccacgat
atgttataccacgggcttgatgcgccagaggtgacggaccaccaatatgaccttctggta
caagagaaaaaaaggctcttggacgagttcccggacattcgtcagtatgatgactacgca
gacgtcgtgggcacgcctaaaattgactccaggttccccaaggtgcagcatttggagccc
atgctctctctggaaaacgcttttaccgtacaggatgtggaaaaatttatcaccagggtg
aggcggttccttgagctgcagccagatgacattttagagctttcctgcgagttaaaaatg
gatggcatgtcattctctgcgctataccatggtggaaagcttaccagagtggcaacgcgc
ggcaatgggcacttcggcgaggatatcaccaccaacgcgatggtcctgcgcgggctgcca
catcagctagattcggccccagaagtgcttgaagtgcgcggtgaaatatacatgcaccat
gaagactttgaaaagctacgagggtcctgcaattttgcaaatccacgtaacgcagccgcg
gggtcaatacgccagctcaaccagaagattgttgaggagcgcaaccttagttacgtggct
tattccgcggtaaacagcacatttgcaacccagcaggaaatactaaagcagctggatgaa
tgggggtttcatacaaacaagcaagtgcttttcacggacaaaatagaagaggcgattgca
ttttataactcggtctacacaaccagaagtgcgcttggttatgacatagacggagtcgta
tacaaggtaaacagcatcaatttccagaagcttctcggtgcaaccgggaaatcaccccgt
tgggcaattgcgcacaaattcccctctactgaggctcgcacaaaacttcttgatatcacc
gtacaagtaggcagaaccggcgttgtaactccaatagcagagctggagccaatcaacata
ggaggcgttatggtttccagggcaagtctgcacaacctcaatgaaatcgaacgcaaagat
gtgcgcataggagacttggtcatagtaaagcgggcgggagaagttataccacaggtggtt
gacgtagataaaaccctccgcagtagcgggacgcagaaatttgtctttccctcgcactgc
ccgtcatgcggtagcaagctgcaccgcgagcccggtgaagtcgctctgcggtgtgtggca
gagttgtcatgcaaagcacaggctctagagcgcgttaagcacttcgtatccagagatggc
ttaaacattatgggcctgggggcaaagcagatagagttcttctgcaaccatgggctgatt
ggcagcatagccgatattttttccctggaggaaaagctacatggcattaacctggataca
gaacatgggtggggggaaaagtcagtcgcaaatctcatcgccgcaatacgcaacagcgca
acagtcaggctcagcaacttcatatttgccctgggaatacggtttataggcgtgggcgcg
gcaaaacttattgctgaacattacagatcttataaaaactggcaccaagcgatgttggcg
ctcaccgaaacacatgatactgtacaaattcgcggtttgggggaaaaaagcataagttct
ttgaaggcgtttttctctgtgcagggaaatctggaagtattagagtcgctgagcgcaaag
ctcaacattttggacgaggcatctccggcgcaacgcggcagctccgccatttccggcaaa
accgtggtgtttaccggcactttggagagcatgtcaagaacggaagcgaagctgcaggcg
gaaagcctaggggctaaagtggcgaattccgtatccgcaaacacctggttactggttgca
ggtagcaatccaggaagtaagcacgaaaaagcactaagcctgaacgtcagggtaatagac
gagcagacttgggtgaagatggtagaggatgcacgctcctga
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