Alteromonas macleodii English Channel 673: AMEC673_09315
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Entry
AMEC673_09315 CDS
T02254
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amg
Alteromonas macleodii English Channel 673
Pathway
amg03030
DNA replication
amg03410
Base excision repair
amg03420
Nucleotide excision repair
amg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMEC673_09315
03410 Base excision repair
AMEC673_09315
03420 Nucleotide excision repair
AMEC673_09315
03430 Mismatch repair
AMEC673_09315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amg03032
]
AMEC673_09315
03400 DNA repair and recombination proteins [BR:
amg03400
]
AMEC673_09315
Enzymes [BR:
amg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMEC673_09315
DNA replication proteins [BR:
amg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMEC673_09315
DNA repair and recombination proteins [BR:
amg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMEC673_09315
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMEC673_09315
MMR (mismatch excision repair)
DNA ligase
AMEC673_09315
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMEC673_09315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AFT74557
UniProt:
A0AB32ZYC0
LinkDB
All DBs
Position
2178397..2180433
Genome browser
AA seq
678 aa
AA seq
DB search
MSDSLEQAKQQIATLRNTLNEYNYQYYVMDDPSVPDAVYDRDMQALIALEKQYPTLQSPN
SPSQKVGGAALLAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRLKDSATLDFSCEPKL
DGLAVSILYENGELVRAATRGDGQVGENITANVRTIANVPLTLRGEHYPERVEVRGEVFM
PRDGFAKLNEHQKEAGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPESFE
LPTTHSERLKQLGNWGLPLCPDIDTAEGGKGCLAYYNHILEKRDNLPYDIDGVVFKVNRI
DLQNALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVS
NATLHNQDEISRLGVKVGDTVVIRRAGDVIPQVVSVVEANRTGSETDITFPSQCPVCDSQ
VEKLEDEAVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADF
FTLSLGDVVGLERMAEKSASKLLASLEASKQTTLAKFLYALGIREVGEATAANLAAHFET
LEAIREASLEALVEVQDVGEVVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDSDNL
PLEGKTCVITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELD
VEVWDEAALIAFLSEHEK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattctttagaacaagcaaagcaacaaatagcaacacttcgcaacacacttaat
gagtacaactatcagtactatgtgatggatgacccttcggttcctgatgcagtatatgat
agagatatgcaggcgcttattgcgctagaaaaacaatatcctacgcttcaaagcccgaat
tctcccagtcaaaaagtagggggcgcagcgttattggcctttgaacaagttacccatgat
gttcctatgctgtcgctggataacgcctttgatgaagaatcactgcttgccttcgaaaaa
cgtttaaaagacagactaaaagattcggcaacgttagattttagctgcgaacccaagcta
gatggtttagcggtaagtattctgtatgaaaatggcgaattagtgcgtgctgccacccgt
ggtgacggccaggtaggcgagaatatcacggctaacgtgcgtactatcgcaaacgtgccg
ttaacgcttcgtggtgagcattatcctgagcgcgtagaagtgcgcggtgaagtgtttatg
ccccgtgatggctttgcaaaattaaatgagcatcaaaaagaggccggaggcaaggttttt
gccaacccccgtaatgcagcggctggcagtttacgacagttagactctaaaattacggcc
aagcgcccgctgatgttttatgcttattcgctaggcgttgtgcaacccgaaagttttgaa
ctgcccacaacacacagcgagcgccttaagcagttgggtaattgggggctgccgctgtgc
cctgatattgacaccgccgagggcggtaagggctgcttggcatactacaaccacattttg
gaaaagcgcgataatttgccgtatgacatcgatggcgttgtgtttaaggtcaaccgtatt
gacctgcaaaatgcccttggatttgtggctcgagcgcctcgctgggcaattgcgcagaag
tttcctgcacaagaagaagtgactaagttactggacgttgagtttcaggtaggaaggact
ggtgcgatcacgccggttgcccgcttagagcctgtatttgtgggtggagtaactgtgtcg
aatgctactcttcacaatcaggacgaaatttccagattaggcgttaaagttggcgacacc
gtggtaattcgacgtgcgggtgacgtaattcctcaagtggtatctgtggtagaagctaat
cgcacaggtagcgaaactgacattaccttcccaagccaatgcccagtgtgtgactcgcag
gttgagaaattagaagacgaagcggttgcccgttgcaccggtgggttaatttgtgcagca
caacgcaagcaggcgcttaagcattttgcttcgcgtaaagcattcgatattgatggtctg
ggcgacaagttagtcgatcagttagttgacgctgatcttgtgcacagtcccgccgacttt
ttcacgctttcgttaggcgatgttgttgggctagagcgcatggctgaaaagtctgccagt
aagctactggcatcgcttgaagcttcaaagcaaaccacgcttgccaagttcctatacgca
ttggggatccgtgaggttggcgaagctactgcggcaaacttggctgcgcacttcgaaacc
ttggaggctattcgcgaggcgtcgcttgaagcactggttgaagtccaagacgttggtgaa
gtggtggctacccacattttcaatttctttaacgagtcacacaataccgatgttattgat
gcgctgttaaaagaaggaattaattggccagctattgaaaagccagattcggataatttg
cctcttgaaggcaaaacatgcgttattacaggtacgctcagcgaaatggggcgttctgat
gcgaaagcccgtttgcagttacttggtgcaaaagtggcaggctcggtaagtaagaatacc
gactttcttgtagcaggtgaaaaagcgggttccaagctaaccaaagcacaagagctagat
gtggaggtatgggacgaagctgcgcttatcgcttttttatcagagcatgaaaagtag
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integrated database retrieval system
