Alteromonas mediterranea 615: I633_10145
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Entry
I633_10145 CDS
T02719
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amh
Alteromonas mediterranea 615
Pathway
amh03030
DNA replication
amh03410
Base excision repair
amh03420
Nucleotide excision repair
amh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I633_10145
03410 Base excision repair
I633_10145
03420 Nucleotide excision repair
I633_10145
03430 Mismatch repair
I633_10145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amh03032
]
I633_10145
03400 DNA repair and recombination proteins [BR:
amh03400
]
I633_10145
Enzymes [BR:
amh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I633_10145
DNA replication proteins [BR:
amh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I633_10145
DNA repair and recombination proteins [BR:
amh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I633_10145
NER (nucleotide excision repair)
GGR (global genome repair) factors
I633_10145
MMR (mismatch excision repair)
DNA ligase
I633_10145
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I633_10145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
5_3_exonuc
DZR_2
DUF4796_N
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGP78015
UniProt:
S5ADY5
LinkDB
All DBs
Position
2036876..2038912
Genome browser
AA seq
678 aa
AA seq
DB search
MSDTLEQARKKVAELRNTLNEYNYQYYVLDDPSIPDAVYDRDMQSLIALEKQYPSLQSPN
SPSQKVGGEALSAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRLKDTSSLHFSCEPKL
DGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVPLTLRGDAHPDRVEVRGEVFM
PREGFAKLNEHQKNAGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPDNFT
LPTTHSERLSQLGKWGLPLCPDIDTAEGGRGCLDYYHHILEKRDNLPYDIDGVVFKVNRI
DLQAALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVS
NATLHNQDEITRLGVKVGDTVVIRRAGDVIPQVVSVVDTKRTGSETDIAFPSQCPVCGSQ
VEKLEDEAVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADF
FTLSLGDVVGLERMAEKSASKLLSSLEASKQTTLAKFLYALGIREVGEATAANLAAHFET
LDAIRDASIEALVEVQDVGEIVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDADNL
PLEGKTCVITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELD
VEVWDEAKLIAFLAENEK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacactttagaacaagctcgaaaaaaagttgccgaactgcgcaacaccttaaac
gaatataactaccagtattatgtattggacgatccctcaatacccgacgcggtatacgat
agggatatgcagtcacttattgcgcttgaaaaacagtatccttctttacaaagccctaat
tccccaagtcaaaaagtggggggggaggcattatcggcatttgagcaagtcacccacgac
gtgcctatgctttcgcttgataatgctttcgatgaggaatctcttcttgcttttgaaaag
cgtctcaaggatagattaaaagacacatcaagtttgcatttcagttgcgagcctaagtta
gatggccttgccgtaagtatcctttatgagaatggtgaacttgttcgtgcggccacacga
ggtgacggtcaagtcggtgagaatattacggcgaatgtacgcactatttctaacgtgccg
ttaacgttgcgcggagacgctcaccccgatcgcgtagaagttcgcggtgaagtattcatg
cctcgcgagggctttgccaagttaaacgaacatcagaaaaacgccggtggtaaggtgttt
gccaatccacggaatgccgcagcgggaagtttacgtcagcttgattcaaaaataaccgct
aaacgcccgttgatgttttatgcatactcgctaggcgtagtacaacctgataactttacg
ctacctaccacccatagcgaacgtctctcacaattaggtaaatgggggctgcccttgtgc
cccgatattgatacagctgaaggtgggcgaggctgtctcgattactatcatcatatatta
gaaaagcgtgacaacttaccttacgacatagacggcgttgtctttaaagtaaaccgtatt
gatttacaggctgcgctagggtttgtagcacgtgcgccaaggtgggcaattgcacaaaag
tttcctgcccaagaagaagtgactaaactgcttgatgtagagtttcaggttggccgtacc
ggtgcaattacccctgtcgcaaggcttgagcccgtttttgtaggcggtgtaaccgtgtca
aatgcgaccttgcacaaccaagatgagattactcgtttaggcgttaaagtgggtgacact
gtggttatccgccgtgcaggtgatgttattccgcaggtggtatctgtggttgatacaaaa
cgtacaggcagcgaaaccgacatagcttttcccagtcagtgccctgtgtgcggctcacaa
gtagaaaagcttgaagatgaggcggttgcccgttgtacgggtgggttaatctgtgcagcg
cagcgcaaacaagcgcttaaacattttgcttctcgaaaggcatttgatattgacggttta
ggggacaaattggtcgatcagctagttgatgccgatttagttcatagccctgctgacttc
tttactctatcacttggtgatgtggttggtttagagcgcatggctgaaaaatcagcgagt
aagttgttatcctctctagaggcatctaaacaaactaccttagctaagtttctatacgca
cttggtattcgagaagtaggggaagcgacagcagctaatttagcggcgcactttgaaacc
ctcgatgcaattcgcgacgcgtcgatagaggcgctggttgaagtacaggatgtgggcgag
atagtagcaacacatatatttaacttctttaatgagtcacacaatactgatgtgattgat
gcgttgttaaaagaaggcattaactggcctgcgattgaaaaacctgacgcggataactta
ccgcttgagggtaaaacctgtgtgatcaccggaacgcttagcgaaatgggccgctcggat
gctaaagcgcgcttacaactcttaggggctaaagtggcgggttcggtaagtaaaaatacc
gattttctggttgctggagaaaaggcaggctctaaattgacgaaggcccaagagttagac
gttgaggtgtgggatgaagccaaacttattgcttttctcgcagaaaatgagaaatga
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