Aminipila terrae: Ami3637_10865
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Entry
Ami3637_10865 CDS
T06414
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amic
Aminipila terrae
Pathway
amic03030
DNA replication
amic03410
Base excision repair
amic03420
Nucleotide excision repair
amic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ami3637_10865 (ligA)
03410 Base excision repair
Ami3637_10865 (ligA)
03420 Nucleotide excision repair
Ami3637_10865 (ligA)
03430 Mismatch repair
Ami3637_10865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amic03032
]
Ami3637_10865 (ligA)
03400 DNA repair and recombination proteins [BR:
amic03400
]
Ami3637_10865 (ligA)
Enzymes [BR:
amic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ami3637_10865 (ligA)
DNA replication proteins [BR:
amic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ami3637_10865 (ligA)
DNA repair and recombination proteins [BR:
amic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ami3637_10865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ami3637_10865 (ligA)
MMR (mismatch excision repair)
DNA ligase
Ami3637_10865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ami3637_10865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
HHH_5
Lar_restr_allev
DNA_ligase_ZBD
Peptidase_C14
RUBY_RBDX
HHH
Nlig-Ia
RIG-I_C-RD
Motif
Other DBs
NCBI-ProteinID:
QHI73976
UniProt:
A0A6P1MQP0
LinkDB
All DBs
Position
2305680..2307680
Genome browser
AA seq
666 aa
AA seq
DB search
MDNRIQEMKAKIVLLNQAAKAYYQESREIMPNIEYDRLYDELVALEKETGITLANSPTVN
VGYEVLSDLPKEAHASRMLSLDKTKDVDTLAAFLGNKKGVLSWKLDGLTIVLTYEGGKMV
KAVTRGNGEIGEVITNNAKVFANTPVSIPFKGRLVLRGEAVITYSEFEKINNQISEADAK
YKNPRNLCSGSVRQLNNQITKERNVQFFGFSLVQAEEQQEAQVKNPALGISTTNSRKDQL
DWLQSLGFDVVEYRMTSSETIHEDVEWFAAQIEHNDFPSDGLVLLIDDIQYGESLGNTAK
FPRNAIAFKWRDELKETTLQRIEWSASRTGLINPVAIFDPVELEGTTVSRASVHNISIMR
QLELGSGDTIEVYKANMIIPQIADNLTRSGIDNIPDKCPVCGGHTAIKNDNGVEVLCCTN
SECLAKQIKSFTHFVSRDAMNIEGLSEATIEKLIARGLIKELADLFHVERFKEEIIEMEG
FGEKSFKNLTASVKKASVTTPVRLLYSLGIPNIGVANAKIICKNCGYDWGKIQQLSEEEL
VEIDGIGVIMAEAYVKFFRDPKKQKIVQDVLAEITFEEVSYSQPAEQIFEGMVFVITGTL
DHFENRDELKKLIESKGGKVTGSVTSKTNYLINNDALSNSSKNKKAKELGIKIITEEEFI
IMGPLQ
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggataatagaatccaggaaatgaaagctaaaattgtgcttttgaatcaggcggcaaag
gcatattatcaggagagccgtgaaatcatgccaaacatagagtatgaccgactgtatgac
gaactggtggccttggaaaaagaaacagggataactctggcaaacagtcccaccgtaaat
gtggggtatgaagtgctgagcgatttgccaaaagaagcccatgcctcaagaatgctgtct
ctcgacaaaacaaaagatgtagatactttagctgccttcttagggaataaaaagggcgta
ctttcctggaagctggacggtctgaccatagttcttacctatgaaggtggaaagatggta
aaagcggtgacaagaggtaacggcgaaattggtgaagtaatcacaaataacgcaaaagta
tttgccaatacgccggtaagcattccatttaaagggaggctggtacttagaggtgaggcg
gtaattacctattcagagtttgaaaaaattaataatcagattagcgaggcggatgccaaa
tataagaacccaagaaacctgtgcagcggcagtgtcaggcaattaaataaccagattacc
aaagaaagaaacgtacaattctttgggttttcattggttcaggctgaagagcagcaagaa
gcacaagtgaaaaatcctgcattaggtatctctactaccaactccagaaaagaccagctt
gactggcttcaatctctgggttttgatgtagtggaatataggatgacttcttcagaaaca
atccatgaggatgttgaatggtttgcagcgcaaattgaacataatgacttcccatcggat
gggttggtattgctaatagacgatatacaatatggcgaaagccttgggaatacagcaaaa
tttcctagaaacgccatagcctttaagtggagggatgaactaaaagaaactacgctgcag
aggattgaatggagtgcttcaaggactggtctgattaatcccgtagcaatatttgatccg
gttgagctggaagggacaacggtaagccgtgccagtgtacacaatatcagtattatgcgc
cagctggaactgggcagtggagataccatagaagtttataaagccaacatgattattcct
cagattgcggacaatttaacacgaagtggaattgataatataccggacaaatgtcctgtg
tgcggaggtcatactgctataaagaatgataatggggtagaagtactttgttgtacaaat
tctgaatgtctggcaaaacagattaaatcatttacgcattttgtcagccgcgacgccatg
aatatagagggcttgtcagaggctactattgagaaattaatagcccggggactgataaag
gaactggcggatttattccatgttgaaaggtttaaggaagagattattgagatggaaggg
tttggtgaaaaatcctttaagaatttgacagcttccgttaaaaaagccagtgtgacaaca
ccagtaaggcttctatatagtctgggcatcccgaacataggtgtagctaatgcaaaaatc
atctgtaaaaattgcgggtatgactgggggaagattcagcagctatctgaagaggaattg
gttgagattgatggcattggcgttatcatggccgaagcttatgttaaatttttcagggat
ccaaagaaacaaaaaattgttcaggacgtgctggccgaaattacctttgaggaagttagc
tacagtcagccagcagaacagatttttgagggaatggtttttgtaatcacagggacttta
gatcactttgagaaccgggatgaattaaagaaactgattgaaagcaagggtggaaaggtt
actgggtctgttacttcaaaaacaaattatcttatcaataatgatgctttatccaattca
tcaaagaataaaaaagcaaaagagttaggaattaaaatcataacagaagaagaatttata
attatggggccgttgcaataa
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