Aminipila luticellarii: EQM06_09930
Help
Entry
EQM06_09930 CDS
T05806
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amij
Aminipila luticellarii
Pathway
amij03030
DNA replication
amij03410
Base excision repair
amij03420
Nucleotide excision repair
amij03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EQM06_09930 (ligA)
03410 Base excision repair
EQM06_09930 (ligA)
03420 Nucleotide excision repair
EQM06_09930 (ligA)
03430 Mismatch repair
EQM06_09930 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amij03032
]
EQM06_09930 (ligA)
03400 DNA repair and recombination proteins [BR:
amij03400
]
EQM06_09930 (ligA)
Enzymes [BR:
amij01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EQM06_09930 (ligA)
DNA replication proteins [BR:
amij03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EQM06_09930 (ligA)
DNA repair and recombination proteins [BR:
amij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EQM06_09930 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EQM06_09930 (ligA)
MMR (mismatch excision repair)
DNA ligase
EQM06_09930 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EQM06_09930 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
Lar_restr_allev
Knl1_RWD_C
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QAT44143
UniProt:
A0A410PYU9
LinkDB
All DBs
Position
complement(2129398..2131410)
Genome browser
AA seq
670 aa
AA seq
DB search
MDSKVEEMKEKIARLNKAAKAYYQESREIMPNIEYDRLYDELEALEAETGVTLASSPTVN
VGYEVLSDLPKEAHASRMLSLDKTKEVDTLGTFLGDKTGVLSWKLDGLTIVLTYEAGKMA
KAVTRGNGEIGEVITNNAKVFANIPVSIPFKGKLVLRGEAIISYSEFEKINAQISDAGAK
YKNPRNLCSGSVRQLNNQITRERNVQFFAFSLVQAEDAPGNPISDKLSEKAPWTNSRKEQ
FDWLKLQGFDVVQHRLTTAETIHQDVEWFASHIGNNDFPSDGLVLLIDDIQYGESLGNTA
KFPRNSLAFKWRDELKETTLQKIEWSASRTGLINPVAIFDPVELEGTTVSRASVHNISIM
RQLELGKGDTIEVYKANMIIPQIAENLTRSGIDDLPETCPVCGEPTSVKNDNGVEVLFCT
NAECLAKQIKSFTHFVSRDAMNIEGLSEATIEKLIAKGLIKELADVFHVEQFKSEIVEME
GFGEKSFNNLVSSVKKASVTTPVRLLYSLGIPNIGVANAKNICRCCGHDWERLQKLSIEE
LMEMDGIGGIMAEAYVKFFADEKKQKIIQDILKEITFEDVPLHAEEEQVLSGMVFVITGT
LNHFENRDALKAWIESKGGKVTGSVTSKTSYLINNDALSGSSKNKKAKELGIEIITEEEF
MEKYEVKGNA
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggattcaaaagtagaggagatgaaagaaaaaattgcacgcctaaataaggcggcgaag
gcttactatcaggagagccgggaaatcatgccgaatatagagtatgacaggctgtatgat
gagctggaggcactggaagccgagactggcgtgaccttagcgagcagtcctacggtgaat
gtagggtatgaggtattgagtgatctgcccaaggaagcccatgcttccagaatgctgtct
ctcgacaagacgaaagaggtggataccttaggcacttttttgggtgataagacgggcgtg
ctttcgtggaagctggatgggctgactatcgtgctcacctatgaagccgggaaaatggca
aaagccgttaccagaggaaacggagaaatcggagaggtcataacaaacaatgccaaagtg
tttgccaatatacccgtcagcataccgtttaaaggaaagctggttctccgaggggaagcg
atcatctcctattcggagtttgaaaaaatcaatgcacagatcagtgacgcgggcgcgaaa
tataaaaaccccagaaatctatgcagcggcagtgtcagacaattaaataaccagattaca
agggaaaggaatgtacagttttttgctttctcattggttcaggcagaggatgctccggga
aatcccatttcagacaagctgtctgagaaagctccatggacaaattccagaaaagagcag
ttcgactggttgaagcttcaagggtttgatgtggtacagcacaggctgactacggcagag
acgatccatcaggatgtggaatggtttgcgtcgcatattggaaacaacgatttcccatcg
gatggattagtattgttaatagacgatatacaatatggcgaaagccttggaaatacagca
aaatttccaagaaattcgctggcatttaaatggcgtgacgaactgaaagagaccaccttg
cagaagattgaatggagtgcttccagaaccggtctcatcaatccggtagcgatctttgat
ccggtggagctggagggaaccaccgtcagtcgtgccagtgtgcacaatatcagtatcatg
cgccagctggagcttgggaaaggggataccatagaggtttataaagccaatatgatcatt
ccgcagattgcggaaaacctgactcgaagcggcattgacgaccttccggaaacatgccct
gtgtgcggagagcctacctccgtaaagaacgacaatggagtagaggttcttttttgcacg
aatgcagaatgtctggcgaaacagattaaatcgttcacgcactttgtcagccgtgacgcg
atgaatatagagggtctttcagaggcgactattgagaaactaattgcaaaaggattgatc
aaggaactggccgatgtatttcatgtggagcaattcaaatctgaaattgttgagatggaa
ggctttggtgaaaaatcttttaacaacctagtctcttctgttaaaaaggccagtgtgaca
acgcctgtacggcttctttacagcttgggaattccaaacatcggcgtggcaaatgcgaag
aatatctgtcggtgctgcgggcatgactgggaaagacttcagaagctgtccatagaagaa
ctgatggagatggatggaatcggcggtattatggcggaggcttatgtcaagttctttgca
gatgagaagaaacagaaaatcattcaagatatattgaaggaaattacttttgaggacgtc
cctctccatgcggaggaagaacaagttttgagcggtatggtttttgtcattacggggacc
ttgaaccattttgagaatcgggatgcattgaaagcgtggattgaaagcaagggcggaaaa
gtgaccggatcggttacttccaaaacaagttatttgatcaataatgatgctttgtccggt
tcgtctaaaaataaaaaggcgaaagagctgggaattgaaataataaccgaagaagaattt
atggaaaaatacgaggtgaaaggaaatgcttaa
DBGET
integrated database retrieval system
