Acropora millepora: 122958243
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Entry
122958243 CDS
T06134
Name
(RefSeq) TNF receptor-associated factor 6-like isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
amil
Acropora millepora
Pathway
amil04120
Ubiquitin mediated proteolysis
amil04140
Autophagy - animal
amil04144
Endocytosis
amil04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
amil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122958243
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
122958243
04140 Autophagy - animal
122958243
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
122958243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amil04131
]
122958243
04121 Ubiquitin system [BR:
amil04121
]
122958243
Enzymes [BR:
amil01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122958243
Membrane trafficking [BR:
amil04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
122958243
Ubiquitin system [BR:
amil04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
122958243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
Sina_ZnF
zf-C3HC4_4
zf-TRAF_2
zf-C3HC4_3
zf-RING_5
zf-RING_2
RING_XB3-XBAT31
TRAF3_RING
U-box
Imm7
zf-C2H2
zf-DNA_Pol
zf-Di19
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
122958243
NCBI-ProteinID:
XP_044174908
LinkDB
All DBs
Position
4:20605815..20614756
Genome browser
AA seq
538 aa
AA seq
DB search
MSSDLRERSSEFDVVTLDTSRERFTFLENPSGRNEPHEIENRRSVGYDEDFDPPLEDKYQ
CRICFLFLREPMLTICGHRFCQGCILRSIRGAGLKCPLDRQDLLERQVFPDNCTKREILN
HPVFCRLKKHGCPWKGPLGNLEDHLKECDFVDVSCPKNCGKKFQRRDLEKHLKDDCPNTK
VRCTYCTEEVLRNRVENHFQDCPQYPLSCEKCGKENIPRNEMQGHIEKECPMAELKCPFS
VVGCPFEGPRSAVNEHVKEEMVSHLTDFIKEFEALRIEQQGHGQWKLDRPGLQAPQSRSR
RTRGGVEAQEQASEGLLPNDLATLCQQQQTEIDLLRGLVNDMTSTVQRLERRHDESRMRM
ETQLQELTIRVNRQETRADELEGRVCNGSYIWRIENYQQRRQDAINGVATAVHSPAFYTS
LYGYKLCLRINLNGVDSGVGTYIALFVHMMQGDYDSILEWPFTGRITLTILDQSEGTELR
QHMSRSFIVNPNLPAFRKPTVYRNREGYGYVVFAPIEHISEPRYIKNDTMLVLFQIDH
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtgatttaagagagagaagtagcgaatttgatgttgtgacgctagacacgagc
agagagagatttacgtttcttgagaatccttctgggagaaatgaaccacatgaaattgaa
aatcgtcgttctgtaggttacgacgaagatttcgatcctcctttggaagacaaatatcaa
tgtcgaatctgctttttgttccttcgcgaaccaatgctgactatttgtggacacagattt
tgtcaaggttgcattttgcgttcaataaggggtgctggtctcaaatgtccactcgatagg
caagatctgttggagcgtcaggtctttccagacaactgcaccaagcgtgaaatactgaat
caccctgttttttgccgattgaagaaacacgggtgcccatggaaaggacctctaggcaat
cttgaggatcacttgaaggagtgtgattttgttgatgtgtcttgccctaagaattgcggt
aagaaattccaaaggagagatctggaaaagcatttgaaggatgactgtccaaatacgaaa
gtccgttgcacctactgcactgaagaggttttgcggaacagggtggagaatcatttccaa
gattgccctcaatatcctttgtcttgtgagaagtgcgggaaagaaaacattccaagaaat
gagatgcaaggtcacatcgagaaagagtgtccaatggcggagctcaagtgtcctttcagt
gttgtgggctgtccatttgagggacctcgttctgcagtgaatgaacatgttaaggaggag
atggtaagtcatttgacggatttcatcaaggaattcgaagcattgaggattgagcagcaa
ggccatgggcaatggaagttggatcggccaggcctccaagcgccgcagagtcgctcccga
cgcaccaggggtggggtagaagcccaggagcaggctagtgaaggtctgcttcccaatgat
ttggcaacattgtgtcaacaacagcaaacggaaatcgatctactgagaggccttgttaat
gacatgacgagcacggtacagcgtttagaacgccgccatgatgaatcgcgcatgaggatg
gaaacgcagttgcaagaacttactatcagggtcaaccgtcaagaaacgagagcggatgag
ctcgaaggccgcgtgtgtaatggctcttacatctggaggattgagaactaccaacagcgt
cgccaggatgccatcaacggcgttgcgacggccgtacacagcccagccttctataccagc
ctctatggttacaagctgtgcttgcgtatcaacttgaatggcgtggacagtggagttgga
acatacattgctctgtttgttcacatgatgcagggcgattatgatagcatccttgagtgg
ccatttaccggaaggatcacccttaccatcttggaccaatccgaaggcaccgaattacgt
cagcacatgagcaggtcatttattgtcaatcccaacctgccggcctttcgtaagccaaca
gtttatcgcaacagggagggctatggctacgtggtctttgctccgatcgagcacatcagc
gaacctcggtacattaaaaacgataccatgctggttctctttcagattgatcattga
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integrated database retrieval system
