Aminobacter sp. NyZ550: N7E70_013245
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Entry
N7E70_013245 CDS
T11159
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amio Aminobacter sp. NyZ550
Pathway
amio03030
DNA replication
amio03410
Base excision repair
amio03420
Nucleotide excision repair
amio03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N7E70_013245 (ligA)
03410 Base excision repair
N7E70_013245 (ligA)
03420 Nucleotide excision repair
N7E70_013245 (ligA)
03430 Mismatch repair
N7E70_013245 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amio03032
]
N7E70_013245 (ligA)
03400 DNA repair and recombination proteins [BR:
amio03400
]
N7E70_013245 (ligA)
Enzymes [BR:
amio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N7E70_013245 (ligA)
DNA replication proteins [BR:
amio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N7E70_013245 (ligA)
DNA repair and recombination proteins [BR:
amio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N7E70_013245 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N7E70_013245 (ligA)
MMR (mismatch excision repair)
DNA ligase
N7E70_013245 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N7E70_013245 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WAX97762
LinkDB
All DBs
Position
2707488..2709644
Genome browser
AA seq
718 aa
AA seq
DB search
MSDKPVDSLSETEAAAELARLAEEIAGHDLRYHAEDAPTISDADYDALRRRNLAIEQRFP
QLVREDSPSKWVGAAVSEKFGKVTHVVPMLSLDNAFADEDVSEFVGRIRRFLRLSADEPV
VITAEPKIDGLSLSIRYENGRLVTAATRGDGQVGENVTANARTIADIPNVLKGDFAEVLE
VRGEVYMSHADFAELNRRNAEAGKQIFANPRNAAAGSLRQLDTSITASRPLRFFAYAWGE
VSDMPADTQMGMVEAFKTYGFKTNPLMKVFDSVDGLLSQYRMIEANRAGLGYDIDGVVYK
VDRLDLQQRLGFVSRSPRWAIAHKFPAEKATTTLLGIDIQVGRTGSLTPVARLQPVTVGG
VVVTNATLHNEDYIKGLGNSGAAIRDEDHDIRVGDTVIVQRAGDVIPQILDVVLEKRPAG
AQPYLFPTRCPACGSHAVREEGEVVRRCTGGLICPAQAVERLRHFVSRNAFDIEGLGEKQ
IEFFFQSQDPALHVGSPADIFTLKRRQEGSLTKLENIDGFGATSTRKLFAAIDDRRQVEF
SRFLFALGIRHIGETNAKRLARHYINFETFRAAGVAAVMPEGKGDKGNAAWQELTGVNGI
GAIVAEAVVEFFAEEHNRQVLDALLAEVTPLDEERIGDVSSPVSGKTVVFTGSLEKMSRD
EAKAMAEKLGAKVAGSVSKKTDLVVAGPGAGSKLKAATDLGVEVITEDQWFERVGQAG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaagccagtcgattcgctgagcgagactgaagccgcggcggagcttgcgcgg
ctggccgaagaaattgccggccacgacctgcgctatcatgccgaggacgcgccgacgatt
tcggacgcggattacgatgcgctgcgccgccgcaacctcgccatcgagcagcgttttccg
caactggtgcgtgaggactcgccgtccaagtgggtgggcgccgccgtctccgagaaattc
ggcaaggtcacccatgtcgtgccgatgctgtcgctggacaacgcctttgccgacgaggac
gtcagcgagttcgttggccgcatcaggcgcttcctcaggctgtccgccgacgagccggtg
gtaatcaccgccgagcccaagatcgacggcctgtcgctgtcgatccgctacgagaacggc
cggctggtgacggcggcgacgcgcggcgacggccaggtcggcgaaaacgtcacggcgaac
gcccgtaccattgccgacattccgaacgtgctgaagggcgactttgccgaggtgctggaa
gtgcgcggcgaggtctatatgagccacgccgactttgccgaactcaaccggcgcaatgct
gaagctggcaagcagattttcgccaatccgcgcaatgcggccgccggttcgctgcgccag
ctcgacacgtcgatcactgccagccgtccgctgcgctttttcgcctatgcctggggcgag
gtcagcgacatgccggccgacacccagatgggcatggtcgaggcttttaagacctacggc
ttcaagaccaatccgctgatgaaggtgttcgacagcgtcgacggcctgctgtcgcagtac
cggatgatcgaggccaatcgcgccgggctcggctacgacatcgacggcgtcgtctacaag
gtcgatcggctcgacctgcagcagcggctcggcttcgtctcgcgttcgccgcgctgggcc
atcgcgcacaagttcccggctgaaaaggcgacgacgacactgctcggcatcgacatccag
gtcggccgcaccggctcgctgacgccggtggcgcggctgcagccggtgacggtgggcggc
gtggtggtcaccaacgccacgctgcacaatgaggactacatcaagggcctcggcaacagc
ggcgcggccattcgcgacgaggatcatgacatccgcgtcggcgacaccgtcatcgtacag
cgggcaggtgacgtcattccgcagatcctcgacgtcgtcctggagaagcgcccggcagga
gcgcagccctatctgttcccgacgcgctgcccggcctgtggcagccatgctgtccgcgag
gagggtgaggtggtgcgccgctgcaccggtggcctgatctgtccggcacaggctgtggag
cgccttcgccatttcgtctcgcgcaatgcctttgacatcgagggcctgggcgagaagcag
atcgagttcttcttccagtcgcaggacccggcattgcatgtcggctcgccggcggacatc
ttcacgctgaagcggcgacaagaaggatcgctcaccaagctcgagaacatcgatggcttc
ggcgcgacatcgactcgcaagctgtttgcggccatcgacgaccgccgccaggtcgagttc
tcgcgcttcctgtttgcgctcggcatccgccacatcggcgaaaccaatgccaagcgcctg
gcgcgccactacatcaatttcgagaccttccgcgccgctggtgttgctgccgtgatgcct
gagggcaagggtgacaagggcaatgccgcctggcaggagctgaccggcgtcaacggcatc
ggcgccatcgtcgccgaggcggtggtcgagttcttcgcagaggagcacaacaggcaggtg
ctcgatgcgctgcttgccgaagtgacgccgcttgacgaggagcgtatcggcgacgtgtcg
tcacccgtttcgggcaagacggtggtgttcaccggctcgctcgaaaagatgtcgcgcgac
gaggccaaggcgatggccgagaagcttggcgccaaggtggcgggctcggtgtccaagaag
accgacctcgttgtggcgggcccaggcgctggctcgaagctcaaggcggcgaccgatctg
ggtgtcgaggtgatcacagaggaccagtggttcgaacgcgtcgggcaggcgggctga
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