Aerococcus mictus: DBT49_0000480
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Entry
DBT49_0000480 CDS
T09409
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amit
Aerococcus mictus
Pathway
amit03030
DNA replication
amit03410
Base excision repair
amit03420
Nucleotide excision repair
amit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DBT49_0000480 (ligA)
03410 Base excision repair
DBT49_0000480 (ligA)
03420 Nucleotide excision repair
DBT49_0000480 (ligA)
03430 Mismatch repair
DBT49_0000480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amit03032
]
DBT49_0000480 (ligA)
03400 DNA repair and recombination proteins [BR:
amit03400
]
DBT49_0000480 (ligA)
Enzymes [BR:
amit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DBT49_0000480 (ligA)
DNA replication proteins [BR:
amit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DBT49_0000480 (ligA)
DNA repair and recombination proteins [BR:
amit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DBT49_0000480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DBT49_0000480 (ligA)
MMR (mismatch excision repair)
DNA ligase
DBT49_0000480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DBT49_0000480 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_ligase
HHH_8
Motif
Other DBs
NCBI-ProteinID:
WMF94563
LinkDB
All DBs
Position
107343..109376
Genome browser
AA seq
677 aa
AA seq
DB search
MTKEEQAQENSQAVQERMTELVDQLNHYAHEYYVLDQPSVSDDLYDKTYRQLEELEASHP
DLIQSDSPTQRVGDVLNEKFDKVHFDHPMLSLGDVFSQEELMAWVDGVQKEFGTDTEFVC
EMKIDGLSVSLLYQDGRLVRGATRGDGSTGENITNNIKTIASIPLRLQEPLNVEVRGEIY
MPKASFAKLNEEREAAGLATFANPRNSAAGSVRQLDPKVTAKRNLNVFLYTGVLPAEAGV
NSQAELLTSYPQWGLRVNPEFKLTHSKEEIWDYVEHVSQVRHDLAYDIDGIVIKVNDFDQ
QEELGYTVKAPRWAIAYKFPAEQANTTIRDIEWTVGRTGVVTPTAVMDPVLVAGSTVQRA
SLHNMDLIQAKDIRLNDTVMIHKAGDIIPEVVSVVTEDRDANSEPYPEPETCPICHSDLV
HLEDEVALRCVNPACPAQAKEKLFHFVSRNAMDITGVGPAVITQLYEKGYVKDPSDLYQL
DEDTLLTLDKVKEKSAQNILQAIDQSRENSLERLLFGLGIRHVGVKAARDIAMTFGSMEA
IQAAEREAISAIDGIGEIIADSVEEYFANDEVTALVNCLSERGVNMTYLGASPQTLANVD
SFWQGKTVVLTGKLTHYSRQEAKALIEGQGGKVTGSVSKNTDVVVAGEDAGSKLTKAQDL
DILIFDEEEMLSHLEDA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaaagaagagcaagctcaggaaaatagccaagcggtccaggaaagaatgacagaa
ctggttgaccagttaaaccactatgcccatgagtactatgtcttagaccaacccagtgtc
agtgatgacctctatgacaagacctaccgccaactcgaagaactggaagccagccatccc
gacttaattcaaagcgactcccccacgcaaagggttggggatgtcttaaatgaaaagttt
gacaaggtccactttgaccatcccatgctgtccttgggcgatgtctttagccaggaagaa
ttgatggcctgggtagatggggtccaaaaggaatttggaacagatactgaatttgtctgt
gagatgaaaattgacggcttgtctgtttctctcctctaccaagacggccgtttggtcagg
ggagcgacccggggcgacggtagtacaggagaaaatattaccaataacattaaaaccatc
gcctccattcccctccgcttacaagaacccctaaatgtggaagttcggggagaaatttat
atgcccaaggcttcctttgccaagttgaatgaagaacgggaggctgccgggctggcgact
tttgctaatccgcgtaactcagccgcgggttcagtccgccaattagaccccaaagtgacc
gccaagagaaacttgaacgtctttctctataccggtgtcctacccgccgaggctggggtc
aatagccaagcggaactgttgaccagctatcctcaatggggccttcgagtgaacccagaa
tttaagttgacccacagtaaggaagaaatttgggactatgtcgaacacgtcagtcaggtc
cgccatgacctggcctatgatattgacgggattgtgatcaaggtcaatgatttcgaccaa
caggaagaattaggctataccgttaaggcgccacgctgggccattgcctataagttcccc
gctgaacaagccaataccaccatccgtgatattgaatggaccgtggggcggactggggta
gtgacccctaccgccgtcatggatcctgtcctagtggctgggtcgaccgtgcaacgggct
tccctccataatatggacttgatccaagccaaggatatccgccttaatgacaccgtgatg
attcataaggctggggacattatccctgaagtagttagcgtggtgacagaagaccgggac
gctaatagtgagccctatccagaacctgagacctgtccaatttgtcacagtgacctcgtc
cacttagaagatgaagtggccctccgttgcgtcaatcccgcctgtccggcccaggccaag
gagaaacttttccactttgtttcccgtaatgccatggatattaccggggtggggccagcg
gtcattacccaattgtacgagaagggctatgttaaagaccctagtgatctctaccaatta
gatgaagataccttgctgaccttagataaggttaaggaaaaatcggcccaaaacatcctc
caagctatcgaccaaagccgggaaaattccttggaacggctcctctttggattaggtatt
cgccatgtgggcgtcaaggcagctcgtgacattgccatgacttttggctccatggaagct
atccaagccgctgaacgggaggcgatttcagccattgatgggattggtgaaatcattgcc
gatagtgtggaggaatactttgccaacgatgaagtgactgccttagtcaactgcctgagt
gagcggggggttaatatgacctacctcggcgctagcccgcaaactttggccaatgtggat
tccttctggcaaggcaaaaccgtggtcttaaccggtaaactgactcactatagccgacaa
gaagccaaggccctcattgaaggtcagggcggaaaagtcaccggatcagtttccaagaat
accgatgtggtcgtggccggtgaagatgccggcagtaaattgaccaaggcccaagaccta
gatattttaatttttgatgaagaagagatgttgagtcacctagaagatgcttag
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