Aminobacterium sp. MB27-C1: RBH88_03010
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Entry
RBH88_03010 CDS
T09908
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amiz
Aminobacterium sp. MB27-C1
Pathway
amiz03030
DNA replication
amiz03410
Base excision repair
amiz03420
Nucleotide excision repair
amiz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBH88_03010 (ligA)
03410 Base excision repair
RBH88_03010 (ligA)
03420 Nucleotide excision repair
RBH88_03010 (ligA)
03430 Mismatch repair
RBH88_03010 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amiz03032
]
RBH88_03010 (ligA)
03400 DNA repair and recombination proteins [BR:
amiz03400
]
RBH88_03010 (ligA)
Enzymes [BR:
amiz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBH88_03010 (ligA)
DNA replication proteins [BR:
amiz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBH88_03010 (ligA)
DNA repair and recombination proteins [BR:
amiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBH88_03010 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBH88_03010 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBH88_03010 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBH88_03010 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
HHH_8
POLH-Rev1_HhH
RNA_pol_A_CTD
BRCT_2
Zn_ribbon_NUD
SpoOE-like
DUF5457
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WMI72084
UniProt:
A0AA51GQ96
LinkDB
All DBs
Position
625139..627193
Genome browser
AA seq
684 aa
AA seq
DB search
MDRNEAQKRIEALREELNHHAYLYYVLDSPEIEDDVYDALLRELLSLEKLFPEFDDPDSP
THRVGGIPLDHFEKVIHETPLLSLDNALSKNEMWSFADRVSSALGLNDIDYLCELKIDGL
AVSLVYEDGVFVRGATRGDGQIGEDVTENLRTIRSLPLRLREKVPGRLEVRGEVLMMREQ
FAALNQAREEAEEPLFANPRNAAAGSLRQLDSTITASRKLSIFLYYVSQPQEYGLSTQKE
ILEWLQHLGFPVQKAWKLCSTRNEIDAFIEKWREGRFSLPYSTDGVVLKVNTVDLWGDLG
YTAKSPRWAIAFKYPPEEKESQILDIEISVGRTGVLTPVANLEPVHLAGTIVKRASLHNE
DEIRRKDIRVKDRVAVRKAGEIIPEVVRVLVEKRTGDEKEFLMPDTCPVCGSHVIRIPGE
VALRCPNKASCPAQLREGLAHFASRAAMDIRGLGDKLIEQLVEKNMVKNMADLYALSREE
LLSLERMGEKSADKLLKAFDTSKQRSLSNLITALGIPLVGKKVAEILADHFGRLDALASA
KEEDLSSLEGVGPKIAASIRAFFDDESNREMIRRLKEAGVQMEEKQEASREDTPFENQRF
VFTGELQSMARADAEALVKDLGGASSSSVSKKTSIVVAGPGAGSKLQKARELGVKVIDEE
EFLTMIRPYIEESFEDKHISAKEE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
gtggatcgtaacgaggctcaaaagcgtattgaagctttaagagaagaactcaaccatcac
gcttatctatactatgttctggactctcctgaaatagaggatgatgtctatgatgccctt
ttgagagagcttctttctttagagaagctcttccctgaatttgacgatcctgattctccc
acccacagggtaggaggcattcctttagatcattttgaaaaggtaattcacgagacgccg
ctgctcagcctcgataatgccttatcgaagaatgaaatgtggtcgtttgcagatcgagtt
tcatcagccttagggttgaacgatatagattatctttgcgaattgaaaatagatggtctg
gccgtctcactggtctatgaagacggggtctttgtgcgaggtgcaacccgtggggatggt
caaattggcgaggatgtaacggaaaatctgcgtaccatccgttcgctaccccttcgtctt
cgcgaaaaagttccgggacggctggaagtccgtggagaagtgctcatgatgagagagcag
ttcgcagcgctgaatcaggctcgtgaagaggctgaggaaccgctttttgccaatccccgg
aacgctgctgccggaagtttgcggcagctcgactcgacgattacggcgtcacggaagctt
tcgattttcctttattatgtgtctcagcctcaggagtacggtctatcgactcaaaaggag
atactggagtggcttcagcatcttggttttcccgttcagaaggcctggaaactctgttcc
actcggaatgagattgatgcctttatagaaaagtggcgggaagggcgtttttccttgcct
tacagcactgatggcgtggtcttgaaggtcaatactgtggatttgtggggagacctggga
tatacggctaaatcgcctcgctgggccattgcctttaaatatccgccggaagagaaggaa
agccagattcttgacatcgaaatttcagtaggccgcacaggcgttcttacccctgtggcc
aatctggagccggttcatcttgccggaaccatcgttaagcgggcaagcctgcataacgaa
gatgagatacggcgcaaggatattcgcgttaaagatagagtagctgttcgaaaggccggg
gagattattcccgaagttgtgcgggtgcttgttgagaagcgtactggagatgagaaggaa
ttcctcatgcctgacacctgtccggtgtgcggttctcacgttattcgcatacctggcgaa
gtggcgttgcggtgtcccaacaaggcatcgtgtcctgcccagcttcgagaaggattggcc
cattttgcctctcgtgccgccatggatattcgtggccttggcgataagctcatagagcag
cttgtcgaaaagaatatggttaagaatatggccgatctctacgctctcagtcgagaggag
cttctttctctcgaacgtatgggcgaaaaatcggcagataaacttttaaaggctttcgat
acgtcaaaacagagatcactttccaatctgattaccgctctgggcattcctcttgtagga
aagaaggttgcggaaatactggcagaccatttcggtcgcttagatgcccttgcctcagcg
aaggaagaggatctttcgtctcttgaaggcgtaggacctaagatcgcggcgtccatcagg
gccttttttgacgacgagtctaacagggaaatgattcgccgcctcaaggaagccggtgtt
cagatggaagagaagcaagaagcgtcaagggaggatacgccctttgaaaaccagcgtttt
gttttcaccggtgaactccaatccatggccagggccgatgccgaagctctcgtgaaagat
ctgggaggggcgagttcctccagcgtgagcaaaaagacatctatagtcgttgcggggcct
ggtgccggaagcaaacttcaaaaggccagggagcttggcgtaaaagttatagatgaagaa
gagtttttaacgatgattcgtccctatatagaagaatcattcgaagataaacatatttca
gcgaaggaggagtga
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