Alligator mississippiensis (American alligator): 102560580
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Entry
102560580 CDS
T03087
Symbol
APAF1
Name
(RefSeq) apoptotic peptidase activating factor 1
KO
K02084
apoptotic protease-activating factor
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04115
p53 signaling pathway
amj04210
Apoptosis
amj05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
102560580 (APAF1)
04115 p53 signaling pathway
102560580 (APAF1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
102560580 (APAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
APAF1_C
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
EIF3I
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WHD_APAF1
NB-ARC
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
CARD
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
WD40_like
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_TEP1_C
CARD_2
Beta-prop_HPS5
Beta-prop_NUP159_NUP214
WD40_RFWD3
Ge1_WD40
Beta-prop_VPS8
PEP5_VPS11_N
Beta-prop_ACSF4
AAA_16
Beta-prop_DCAF12
VPS8_N
nSTAND6
Beta-prop_RSE1_2nd
Nop10p
TruB_C
DUF2576
Motif
Other DBs
NCBI-GeneID:
102560580
NCBI-ProteinID:
XP_006277500
LinkDB
All DBs
Position
Un
AA seq
1247 aa
AA seq
DB search
MDVKSRNHLLLNRLALERDIKTSYVMDHMITDQVLTLQEEEKVKAQATQRDRAAMLINII
LKKDNNSYISFYNALLHEGYKDLAALLHDGIPSITSYDRKDSTDGVAFCVRTILCEGGVP
QRPVVFVTRPELVNEIRQKLYNLRNDPGWVTVYGMAGSGKSVLTAEALRDQSLLEECFPG
GVHWISVGKQDNAGLLMKLHNLCSRLDLDFTYAQRPPLNIGEAKDRLRLLMLHKYPRSLL
VLDDIWDSQTLKAFDNHCKVLITSRDRSVTDHVTGRKYEVHMESGLNDEKGLEILSLFVD
MKIKDMPAQADKIVRECKGSPLVLSLIGALLRDFPNRWEYYLRQLQNKQFRRIKKSSSYD
YEALDEAMSISVEMLNENFKDFYKDLSILPKDVKVPTKVFCILWDMEPEEVEDMQQEFVN
KSLLFCDRNGKSFHYYLHDLQLDFLIEKNREQLQELHEKIVKQYKKHYRLCIPTPGEEDC
MYWYNFLAFHMASAKMQEELCDLMFSLDWIKAKTELVGPAHLIHEYVEYSNILDQKNSLA
RENFQKFLSLNGHLLGRQPFPDIVQLGLCQPETSEVYQQAKLKAHQEVDKGAFYVEWINK
GMKNLSRLVVRPHTDAVYHACFSQDGQKIASCGADRTLQVFKAETGEKLQNVEAHDDEVL
YCAFSPDGRFIATCSADNKAKIWCLRTGKRIFDCVEHTEQVNCCQFNSGNNELLLTTCSN
DSLLKLWDIRNKRCQNTMFGHTSSVNHCRFSPDDKYVASCSTDGTVKLWETGSGNELKCI
KIKDFFRNADEREVEALPKCCSWSTDGATVMVAAKNKLLLLDVETSDLLEEVLSYQNTIQ
YYDFCPSNQLVAVAFSHYSVELWNTKTKTKVADCREHMSWVHCVTFSPDGSLFLTSSDDQ
TIRIWETSKVCKPPEIALKNELDVAFKGDEMMILAILNHTHLQLINGNTGHTVSLTDVED
SISCCCLSEDLQFAAFGQKNGTVKVLEVSGGRVLKSRHGHKTSVQHCLFTSDGQTLISSD
DDPIIQVWNWELEECLFLEGHNETIKNFRLLENSRLLSWSFDGTVKVWNIVHGKIEVNFA
CHKDTVLSCAVSPDATKFSSTSVDKTAKIWSFKSSSILHELKGHEACVRCCTFSFDNKLL
ATGDDKREIRIWDVSSGELLHLCSPVIIDEGGLTHDYWVTDLCFSPDSKMLVSSGGYLKW
WNAVTGEALQTFYTNGTDLQSIYVSSNFKIYVTVDNLGILYVLQMME
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaagagtcgaaatcatttgcttctaaaccggttagcattggaaagagacatc
aaaacctcttatgttatggatcatatgattactgatcaggtactaacattacaggaagag
gagaaagttaaagcacaggctacacagcgggaccgagcagctatgctaataaacattatt
cttaaaaaagataacaactcatacatatctttctataatgcactgcttcatgaagggtac
aaggatcttgcagctcttctccatgatggtatcccaagtatcacctcttatgatagaaag
gactctacagatggagtagctttttgtgtgaggacaatcctctgtgaaggtggagtgcca
cagagaccagttgtgtttgttactcgtccggaactggtaaatgaaattagacagaaacta
tacaacttaagaaatgatccaggttgggttactgtttatggaatggcaggttctgggaag
tctgtcttaacagctgaggcactaagagaccaaagcctcttggaagagtgctttcccgga
ggagtacattggatttctgttggaaaacaggacaatgctgggcttctaatgaaacttcac
aatctttgtagtagattagacctggacttcacttatgcacaaaggccaccacttaatatt
ggagaggctaaagaccgtcttcgtctgctgatgctacataaataccccaggtctctcttg
gtcctggatgacatttgggattctcagacattaaaagcttttgataatcattgtaaagtt
cttattaccagcagggataggagtgtgacagatcatgtgactggcaggaaatatgaagtt
cacatggaaagtggattgaatgatgagaagggacttgaaattttatctctctttgttgat
atgaaaataaaagatatgcctgcccaagctgataaaattgtaagagaatgcaaaggttcg
ccccttgtgttatcattgataggcgcattattacgtgatttccccaatcgttgggaatat
tatctcagacagctgcagaataagcaatttagaaggataaagaaatcttcttcttatgat
tatgaagcacttgatgaagcaatgtccataagtgttgaaatgctgaatgaaaactttaaa
gacttctataaagatctttctattcttccaaaggatgttaaagtgcctactaaggtgttc
tgtattctttgggatatggagcctgaagaagttgaagacatgcagcaagaatttgtaaac
aaatctctcttattctgtgatcgtaatgggaaatcattccattattatttgcatgatctt
caacttgacttcctcatagagaagaatcgtgagcaacttcaggagctgcatgaaaagatt
gttaaacagtacaagaaacattatagattatgtatacctactccaggtgaagaggattgc
atgtactggtataactttttagcgttccacatggctagcgctaaaatgcaggaagaacta
tgtgatctcatgttttctctagattggattaaagccaaaacagaattagtaggacctgcc
catctgattcatgaatatgtagaatacagtaatatactggatcaaaagaatagcctagca
cgtgagaactttcagaaatttctctctttaaatggacaccttcttggacgacagccattt
cctgatattgtacagttagggctttgtcaaccagaaacctcagaagtatatcaacaagct
aaactaaaggcacaccaagaagttgataaaggagcattttatgtggaatggataaataaa
ggcatgaagaacctctcccgtttggttgtccgaccacacacagatgcagtttaccatgcc
tgcttttcccaggatggacagaaaatagcttcttgtggagctgacagaacactgcaggtg
tttaaagcagaaactggagagaaacttcagaatgtagaagctcatgatgatgaagtactt
tattgcgctttctctccagatggtagattcatagcaacttgttcagcagataacaaagcg
aagatctggtgtttaagaacaggcaagcgtatatttgactgtgtggaacatacagagcag
gtcaactgttgccagtttaacagtggaaataatgagcttctcctgaccacttgctcaaat
gacagtttgctcaagctttgggacataagaaataagcgttgtcaaaacacaatgtttggt
catacaagttctgtcaatcattgtagattttcaccagatgataaatatgtggctagttgc
tcaacagatggaacagtgaagctttgggaaacaggctcaggaaatgaactgaaatgtatt
aagataaaggatttcttcagaaatgcagatgagcgagaagtggaagcgttacccaagtgt
tgctcctggtcaacagatggtgctacagtaatggtggcagccaagaataaacttcttctt
ttagatgttgaaaccagtgatttattagaagaggttttaagttaccaaaacacaatccag
tactatgacttctgccccagcaatcaactggtagcagttgctttctcacactattctgtt
gagttgtggaatactaaaaccaagacaaaagtagctgactgcagggaacacatgagttgg
gttcactgtgtgacattttcccctgatggctctttatttctgacatcttctgatgaccag
acaataaggatttgggagacaagtaaagtgtgcaagcctccagaaattgcgttgaaaaat
gaactagatgttgcattcaagggcgatgaaatgatgattttagcaattctcaatcataca
catctacaactaattaatggaaacacaggccatactgtcagtctgactgatgttgaagac
tctatttcctgctgttgcctgagtgaagatcttcaatttgcggcatttggacagaagaat
ggaactgtaaaggttttagaggtgtcgggtgggagagttttgaaatctaggcatggacac
aagacctctgtacaacattgcctgtttacctctgatggccagaccctcatttcaagtgac
gatgatccaattatacaggtgtggaattgggagttggaagaatgcttatttctagaaggt
cacaatgaaacaatcaagaattttaggcttttggaaaattcacgacttctttcttggtca
tttgatggaacagttaaggtgtggaatatcgttcatgggaaaatagaagtcaactttgct
tgccataaagatactgttctctcttgtgctgtctctcctgatgccactaagttttcatct
acctctgttgataaaactgccaagatatggagcttcaaaagttcctccattcttcacgag
ctaaagggtcatgaagcctgcgtgcggtgctgtactttttcatttgataacaaattattg
gccactggagatgacaaaagggaaatacggatttgggatgtctcaagcggtgaattactg
catctctgctcccctgtcattatagatgaaggaggtctgacacatgattactgggtgaca
gacctctgtttttctcctgacagtaagatgcttgtgtcttctggaggatatcttaagtgg
tggaatgcagttactggagaagccttgcaaacattctacacaaatggaacagatctccag
tcgatatatgtgtcctctaatttcaaaatatacgtcactgttgataacctcggtatcctt
tatgttctacagatgatggaatga
DBGET
integrated database retrieval system
