Alligator mississippiensis (American alligator): 102568233
Help
Entry
102568233 CDS
T03087
Symbol
THBS1
Name
(RefSeq) thrombospondin 1
KO
K16857
thrombospondin 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04115
p53 signaling pathway
amj04145
Phagosome
amj04148
Efferocytosis
amj04350
TGF-beta signaling pathway
amj04510
Focal adhesion
amj04512
ECM-receptor interaction
amj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
102568233 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102568233 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
102568233 (THBS1)
04148 Efferocytosis
102568233 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
102568233 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
102568233 (THBS1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102568233 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amj04131
]
102568233 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amj00536
]
102568233 (THBS1)
Membrane trafficking [BR:
amj04131
]
Endocytosis
Phagocytosis
Opsonins
102568233 (THBS1)
Glycosaminoglycan binding proteins [BR:
amj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102568233 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
cEGF
TSP1_ADAMTS
EGF_CA
TSP1_CCN
Laminin_G_3
Laminin_G_2
EGF
Motif
Other DBs
NCBI-GeneID:
102568233
NCBI-ProteinID:
XP_014450949
LinkDB
All DBs
Position
Un
AA seq
1176 aa
AA seq
DB search
MGVSGGLVLLLALGICEANRIVESGGDDNSVFDLFELIGITRKAPGRRALGVYLVKGAEI
SSPAYRIEDASRIPAVSDDKFQDLLDAIYAEKGFILLANLRQPKKSRGALLAVERKDGSG
HIFNLVSNGKADTLDLSLSGNGKQQVVSVEDVMLADGHWKNITLFVQEDRAQLYVGCEKM
ENAELDFPIQNIFTRDLASSARLRVAKGGVNDNFQGALQNVRFVFGTTLEAILRNKGCSS
STSAIITLDNPINGSSPAIRTNYIGHKTKDIQAICGFSCDELTNMFVELQGLRSMVTTLQ
DRVRKVTEENEFIAKVAQITPGVCIHNGILHKNKEEWTIDSCTECTCQNSATICRKVSCP
LMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRCE
GSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGMGMITRIRLCNSPVPQLNGKPC
AGDARETKSCQKDPCPINGNWGPWSPWDACTVTCGGGLQKHSRLCNNPEPQYGGKDCVGE
PTGTRVCNKQDCPIDGCLSNPCFAGTTCTSSPDGSWKCGACPTGYHGDGVHCKDIDECQE
VPDVCFVFNGVHRCENTEPGYNCLPCPPRFTGTQPFGRSIEDATANKQVCKPRNPCTDGT
HTCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCK
KDNCPNLPNSGQEDYDKDGIGDACDSDDDNDNIPDDRDNCPFIYNPQQYDYDRDDVGDRC
DNCPYNHNPDQIDTDNNGEGDACAVDIDGDGILNEGDNCQYVYNVDQRDTDLDGVGDQCD
NCPMEHNPDQADTDSDRIGDKCDSNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDAC
DHDDDNDGIPDDKDNCRLVANPDQVDSDGDGRGDACKDDFDQDNVPDIDDICPENVDISE
TDFRRFQMVPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFFI
NTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPGE
HLRNALWHTGNTTGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMAD
SGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDP
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgtccggcggactcgtgctccttctcgcgctgggcatctgtgaggccaaccgg
attgtcgagtccgggggagatgataatagcgtgtttgacctctttgagctcattggcatc
actcgtaaggcacctgggcgccgggcactaggggtgtatctggtgaagggagctgagatc
tccagccctgcctaccgcattgaggatgccagccgcattcctgctgtctctgatgacaag
ttccaagacctgctggatgccatctacgctgagaagggctttattctgctggccaatctc
cggcagcccaagaagagccgtggtgcactgctggctgtggagcgcaaggatggctctggc
catatcttcaacctggtatccaatggcaaggcagacaccctggacctgagcctgtcgggc
aatggcaagcagcaggtcgtgtcggtggaggatgtcatgctggctgatgggcactggaag
aatatcaccctgtttgtgcaggaggaccgtgcccagctctatgtagggtgtgagaagatg
gagaatgctgagctggactttcccattcagaacattttcacccgagacctggctagcagt
gccaggctccgtgttgccaaggggggagtcaatgacaacttccagggagcactgcagaat
gtgcgttttgtctttggaacaaccctggaagccatcctgaggaataaaggttgttcaagc
tccaccagtgctatcattacattggacaatccaatcaacggctccagtccagctatacgt
accaactatattggccacaaaacaaaggacatccaggccatctgtggcttttcctgtgat
gaactcacaaatatgtttgtggaattgcaaggattacggtccatggttacaactcttcaa
gacagagtgcgcaaagtgactgaagaaaatgaattcattgccaaagtagcccagatcact
cctggagtgtgcattcacaatggaattctgcacaaaaataaagaagagtggactattgac
agctgcactgaatgtacttgccagaactctgccaccatatgccggaaagtgtcatgccct
ctcatgccttgttccaatgccactgttcctgatggagagtgctgtccacgatgctggcct
agtgactatgcagatgacggttggtctccttggtctgaatggacttcatgctctgtgacc
tgtggaaatggaattcagcagaggggccgctcttgtgatagtctcaataaccgctgtgaa
ggttcctctgtacagactcggacctgccacctccaggagtgtgataagagatttaaacag
gatggtggttggagccactggtcaccctggtcatcttgttctgttacttgtggcatgggc
atgatcactagaatccgcctctgcaactctccagttccacagttgaatggcaaaccttgt
gcgggtgacgcaagagaaaccaagtcctgccagaaagatccttgtccaataaatggaaac
tggggaccctggtctccatgggatgcctgtacagtcacatgtggaggaggccttcaaaaa
cacagtcgtctttgcaataaccctgagccccagtatggcgggaaggattgtgtaggtgaa
cccacagggactcgggtatgcaacaaacaggactgcccaattgatgggtgtttgtctaat
ccctgctttgcgggaactacatgtaccagctctcctgatggctcctggaagtgtggtgcc
tgccccactggttaccatggagatggtgttcactgtaaagatatcgatgagtgtcaagag
gttcctgatgtctgctttgtcttcaatggagtgcacaggtgtgagaacactgaacctgga
tacaactgcctgccttgcccaccacgttttactggaacacagccttttggccgcagtatt
gaggatgccacagctaacaagcaggtctgtaaaccacgtaatccatgcacagatggaact
cacacctgcaacaagaatgccaagtgcaattatcttggccacttcagtgacccaatgtac
cgctgtgaatgtaaacctggctatgctggcaatggcattatctgtggggaagataccgac
ttggatggatggccaaatgaaaaccttgtctgtgttgccaatgccacttaccactgcaaa
aaagataactgccccaaccttcccaactctggccaagaagactacgataaggatggaatt
ggtgatgcctgtgacagtgatgatgataatgataacatcccagatgacagggacaattgc
ccatttatttacaacccacagcaatatgactatgatagggatgatgttggtgaccgttgt
gacaattgcccctacaaccacaaccctgatcagatagacaccgataacaatggtgaaggt
gatgcatgcgctgtggatattgatggagatggcattctaaatgaaggggacaactgtcaa
tatgtctacaatgtagaccagagagatacagatttggatggtgttggagatcagtgtgac
aactgtcctatggaacacaatccagaccaggcagacacagactctgaccgcataggagat
aaatgtgacagcaaccaggacatagatgaagatggccatcaaaataaccttgataactgc
ccctatgtacctaatgccaatcaagctgaccatgacaaggatggcaaaggtgatgcctgt
gaccatgatgatgataatgatggtatccctgacgacaaagataactgcagattggttgcc
aacccagaccaggtggactctgatggtgatggtcgtggcgatgcttgcaaagatgacttt
gaccaggataatgtgccagatattgatgacatttgtccagaaaatgttgatatcagtgaa
actgatttccgacgatttcagatggttccccttgatcccaagggaacatcccaaaatgat
cccaactgggttgttcgtcaccagggtaaagaactggttcagacggtcaactgtgatcct
ggtcttgcagtgggttttgatgaattcaatgctgtagatttcagtggcacattcttcatc
aacactgagagggatgatgactatgctggctttgtatttggttatcagtctagcagccgt
ttctatgtagtgatgtggaagcaaatcacccagtcctactgggactcaacaccaaccaaa
gctcagggatactctggtctttctatcaaagtagtgaattccaccacgggtccaggagag
cacctgcgtaatgctctgtggcacacaggaaacactactggacaggtgcgaactttgtgg
catgaccctcgtcacataggctggaaagattttactgcctacagatggcgtctcagccat
agaccaaagactggctacattagagttgtaatgtatgaaggaaagaaaatcatggctgat
tcaggaccaatctatgataaaacttatgctggtggtcggttaggattatttgtcttttca
caagaaatggtgttcttctcggatctcaaatatgaatgcagagatccgtaa
DBGET
integrated database retrieval system
