Alligator mississippiensis (American alligator): 102569707
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Entry
102569707 CDS
T03087
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain containing 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amj03036
]
102569707 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
amj03400
]
102569707 (SMCHD1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
102569707 (SMCHD1)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
102569707 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
102569707
NCBI-ProteinID:
XP_006269583
UniProt:
A0A151NEM0
LinkDB
All DBs
Position
Un
AA seq
2026 aa
AA seq
DB search
MAATAGGSSGGAEPRPLSGGTVFLFDRRWKEADPDEKALSCGGGSYRGFRSTVCQAFGIS
SGENFVITTTNRQQITEDNFNEVVQDGVTLYLLQSVDQMLLSATKERIDFLPHYDTLVKS
GMYEYYASEGQNPLPFALAELIDNSLSATSRNTDIRSIQIKLLFDESQGKSAVAVIDNGR
GMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPPPVPRSLNSDISYFGVGGKQAVFFVG
QSARMISKPTDSQDVHELVLSKEDFEKKEKNREAIYSGYIRNRKPADSTHITTDDEKFLH
NLIIEERDKKSFTAVVITGVQPQHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEISAALK
EASPFNNIDIEISMFEKGKIPKIVNLREIKDDMQTLYIKTAADGFEFKAHVEGEGIVEGI
IRYHPFLYDKETYPDDPCFPSRLKDDDDDVNDDCFVVEKGARGKRPIFECFWNGRLIPYT
TVEDFDWCAPPKKRGLAPVECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTR
IFNGQEQRMKIDREFALWLKDCHEKYDKQIKFVLFKGSSARTDLPSKRMQSPWATYASIE
WDGKTYKSGQLVKTIKTLPIFYGSIIKFFLYGDHDGDVYATGGEVEISLEPQALYGEKKI
IPISKLDRTVSDKSVKKYIEDEMARLPDRLSVTWPEGDELLPNETKLAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHTSSGNKEIISHISQHGGKWPYWFKKMENIH
KLGSYTLKLQVVVNESNADTYAGRPLPSKMFKFTIVEGKPEKFSVGLLDPPFRVGVPFNI
PLDLQDEFGHATQLTSHIDPILEASGLTLKYQEITKGENCTIKGVTAKGLVNIYQGKNFN
LKVILPGLKEDSQVLKIRLLPGPPHQLKVKPDSEILKIENGTAFPFQVEVLDESGNITSQ
PKLIVHCKFLGAPELPLYAVDCSNAGTNILTGPVIHVQNIKKDQMLKARIEIPSCKNVPP
IEKTIKLLPSSHVARLQILSVEGQKAIQIKHQDEINWIAGDVMHNLIFQMYDEGEREINI
TSTVAEKIKVNWTPRINREHLIQGLLPDVKVPTSIKDVRYCLITYLDDHVSLESAFTVRP
LPDEPKHIKCKLKGPNTMQMGEELQSEIDIMVTDQYGNQIQTLTSSCINSLGISGIGLDK
SNVKMIWQESTQTITVKGIKFNPGPPESKELCFAWREFSDFLRINLTAGPPAKLHLVDWP
ELEEPISVINGRELQKPLIVQLCDQWGNPSPESNVRISLTKANIIKILPTIQQHKTDENG
RANLGVFSIHAPRGEHSLHLKASYSKGILNCPVIKINVLPDPEKPVCLNVKYDKTASFVA
GSTFPDFMVSIISEDSNIIKNINPARVSMKMWEGQNSGTRASANATSFACSKVKDDKDEG
FFYFRDKMVPERVGNYSIQFGFALDKTNILNSEQIIIEVVPNDPVRLLPEPPPATPAVSN
VQAVASRTLVKNLCLHIMDEYNNRTGDYLAGKIIAKIECPNEDDTEIPLFQGKVSTVEFP
FHYGSAEIVNLVLAENSPGRDSTEYILAFEPDLPGLEKPLEPYRLSFMFYNNFKKQQQMA
TLTRERDQLSQSILAYRSLFETSNQLVTEMKCQAKEAETRETHLKNELKKHQISIPPTNI
LQHVDSLIKQKILEQEAVMKQPRRTCTLPNYSKVNQDILGKIAHLAQIEDNEAAKVISWH
LASDMDCVVTLTTEAARRIFDETQGRQQVLPLDSIFKKTLPDWNRPLPHFRNGKDCFKPI
GKPVFARDLLTFPDNIEHCQIVFGMLLGDTIIIDNLDAANHYRKEVVKIAHCPTLLTREG
DRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKHYYTLSGQLELLQQYRTSVIKLNCANK
DLDSQLQSLKTPEMQKKKQELAEQEKNLKLVEQKLGMTPSDKGSESFQPTTLDFSDSPIP
PKRMRREMVKKLYSAEEWISPTKKQQQQQMQTSTSEFNGTPRKRKA
NT seq
6081 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgacagcgggaggcagcagtgggggggccgagccgaggccccttagtgggggc
accgtgttcctgttcgaccggcgctggaaggaggcggaccccgacgagaaagcgttgagc
tgcggcggcggcagttaccgcggcttccgcagcacagtctgccaggcctttggcatctct
tccggagagaattttgttatcacaactactaacagacaacagattacagaggacaacttc
aatgaggttgttcaagatggggtcactttatatttgctccagtcagtggatcagatgcta
ctttcagcaacaaaggaacgaattgacttcctaccacactatgacacgcttgtcaaaagt
ggcatgtatgaatactatgccagtgaagggcagaatcctttgccatttgcccttgctgag
ttgattgacaattctttgtcagctacttcccgaaatactgatattcggagcatacagata
aaattgttatttgatgaatcccaaggaaaatcagctgttgctgtgattgataatggaaga
ggaatgacttctaaacagcttaacaactgggctgtgtatagattgtcaaaatttacaaga
caaggtgattttgaaagtgaccattcgggatatgtgaggcccccaccagtacctcgtagt
ttaaatagtgacatctcatattttggtgtcggaggcaaacaagcagttttctttgttgga
cagtctgccagaatgataagcaaacctacagattctcaagatgtccatgagcttgtactt
tcaaaagaagattttgaaaagaaggagaagaacagggaagcaatatacagtggatatatt
agaaacagaaagccagctgattctactcacatcaccactgatgatgaaaaattcctacat
aacctcattattgaagaaagggacaagaagagtttcacagcagttgtcattacaggtgta
caaccacaacacatacagtacttgaaaaactattttcatctttggacaaggcaattggca
cacatctaccactactatatccatggaccaaaaggaaatgaaattagtgcagctctaaag
gaagcaagtcctttcaacaacattgatattgagatttcaatgtttgaaaaaggaaagata
ccaaagattgtcaatcttagagagatcaaagatgacatgcagacattgtatataaagact
gcagcagatggctttgagtttaaggcacatgttgaaggggaaggtatagtggaaggcatc
atccgctatcatcctttcttatatgataaagaaacttatcctgatgacccatgctttcca
tcacgattaaaggatgatgatgacgatgttaatgatgactgctttgtggtagaaaaaggg
gccagagggaaaaggcctatatttgaatgtttttggaatggaaggttaattccgtacaca
actgtagaagattttgactggtgtgcgcctccgaaaaagagaggacttgcaccggttgaa
tgctacaacagaatttctggtgcgttatttaccaatgataagtttcaagtcagcacaaac
aagctaacttttatggacctggagttaaaactaaaagataagaacactcttttcacaaga
atcttcaatggacaggaacagcgaatgaaaatagacagagaatttgctttgtggctcaaa
gactgtcatgaaaaatacgacaaacagataaaattcgtactttttaaaggatcatctgct
cgtactgacttgccatcgaaaagaatgcagagcccttgggctacctatgcttcaatagag
tgggatgggaaaacatacaaatctgggcagttggtgaaaacaattaaaactctcccaata
ttctatggaagtatcattaaattttttctgtatggagatcatgatggtgatgtgtatgct
actggaggggaagttgaaatatctctagaacctcaagcgttatatggtgagaaaaaaatt
attccaatctccaaacttgacagaacagtttctgacaagtcggttaaaaaatacatagaa
gatgaaatggcaagacttcctgatcgattgtcagtaacatggcctgaaggagatgaattg
ttaccaaatgagacaaagcttgctggtactccaataggagcattaagaattgaaatactg
aataagaaaggagaggcaatgcaaaaacttcccggtacaagccatggcgggtcaaagaaa
ctgcttgttgaacttaaagttattttacacacttcaagcggcaataaggaaatcatttca
catatcagtcagcatggaggaaaatggccttactggtttaaaaaaatggaaaatattcac
aaacttggaagctacactctgaaactgcaagtggtagtgaatgaaagtaatgcagacact
tacgcaggaaggcctctaccatctaaaatgtttaagtttactattgtagagggtaagcca
gagaaattttctgtgggtcttttggatcctccatttcgagttggagtaccatttaatatt
cctttggatttgcaagatgagtttggtcatgcaacacagctgacaagtcatattgaccca
attcttgaagcgagtggtttgacattaaagtatcaagaaataacaaaaggagaaaattgt
accattaagggtgtcactgctaaaggcctcgtaaatatttatcaaggcaagaactttaat
ctgaaggttattcttcctggtttgaaagaagactctcaggtcttaaaaatcagattactg
cctggcccacctcatcagttgaaagtgaaaccagattctgaaattctaaagattgaaaat
gggaccgctttccccttccaagttgaagtgttagatgaatccggaaatataacatcccag
ccaaaactgatagttcattgtaagtttttaggtgctccagaacttcctctgtatgctgtg
gattgcagtaatgctggaacaaatattttaactggaccagttatacatgtgcaaaatata
aaaaaggaccagatgctcaaagcaaggattgaaatacctagttgtaaaaatgtgccacca
atagaaaagactattaaactgctccccagtagccatgttgcaagattgcagatcttaagt
gtggaaggacaaaaagctattcaaatcaaacatcaggatgaaattaattggattgctggg
gatgtcatgcacaaccttatctttcaaatgtatgatgaaggagaaagagagatcaacatc
acttcaactgtagcagaaaaaattaaggttaactggacacccaggattaaccgagaacac
ctgattcagggactgttaccagatgtaaaagtgccaacgtctataaaagatgtacgttat
tgcctaattacataccttgatgatcatgtatctttggagagtgcatttacagtcagacca
cttccagatgaacccaaacatattaagtgcaaattaaaagggccaaataccatgcaaatg
ggtgaagaactgcagagtgaaattgatataatggttacagatcagtatggaaatcagatt
cagacgttgacatcctcttgtataaattccttggggatttctgggattgggcttgataaa
tcaaatgtgaaaatgatttggcaggaaagtacacaaaccattacagtaaaaggtattaag
tttaatccaggtccacctgaaagcaaagaattatgttttgcttggcgtgagttttctgat
ttccttagaataaatttgactgctggacctccagccaaactgcaccttgtggactggccg
gagttagaagagcctatttcagtgattaatggcagagaactgcagaagcctcttatagtt
cagctctgtgatcagtggggaaacccatctcctgaatcaaatgtcagaatcagtcttaca
aaggcaaacatcataaagatccttcctaccatccagcaacataaaacagatgaaaatggt
agggccaatcttggagtttttagtattcatgcacctaggggagaacattctttacacctt
aaagcctcatacagcaagggcatattaaattgccctgtaatcaagataaatgtcctgcct
gaccctgagaaacctgtatgcttgaatgttaagtatgacaaaactgcttcttttgtagca
ggaagtaccttccctgattttatggttagtattatttctgaagatagcaacatcattaaa
aatattaacccagcacgggtttctatgaaaatgtgggaaggacagaacagtggaactaga
gcatcagctaatgctacatcatttgcctgtagcaaagtcaaggatgacaaagatgaaggc
ttcttttacttcagggataaaatggttccagagagagtggggaattacagcatccagttt
ggttttgcgctagataagacaaatatactcaacagtgaacagataataattgaagtggta
cctaatgacccagtgcgattgctacctgaacctccaccagctactccggcagtgtctaat
gttcaagctgttgccagccggactctggtcaagaatttatgccttcatataatggatgaa
tacaacaatcgtacaggagactatttggctggcaagataatagctaaaattgagtgtcct
aatgaagacgatacagagatccctctgtttcaagggaaagttagtacagtagaatttcca
tttcattatggatctgctgaaattgtaaatctagtgttggcagaaaatagcccaggaaga
gatagcactgaatatattcttgcatttgaaccagacctgccaggtttggaaaaacctttg
gaaccgtatcgtctgtcctttatgttttacaataattttaagaagcagcagcaaatggca
acacttacaagagagagagaccagctatctcagtcaatacttgcatacaggagtttattt
gaaaccagcaaccagcttgttactgaaatgaaatgtcaggccaaagaagctgaaacgaga
gaaactcatctgaagaatgagctgaaaaaacatcaaatcagcataccaccgacaaacata
ctgcagcatgttgattctctcataaaacaaaagatactggagcaggaagcagtaatgaag
caacctaggagaacatgtaccctcccaaactattccaaagtcaatcaagatattttaggg
aaaattgcacacttagcacaaattgaggataacgaggcagcaaaagtcatctcttggcat
ttggcaagtgacatggactgtgtagtcaccctgactactgaagctgctcgtcgtatcttt
gatgaaacccaaggtcgacagcaagtgctgcctcttgattctatatttaagaagactctc
cctgattggaacaggcctttacctcactttcggaatgggaaagattgcttcaaaccgatt
ggaaaacctgtatttgccagagatttgttaacatttccagataatatagaacactgtcag
atagtgttcgggatgctcttaggagacaccatcataatagacaatttggatgctgccaat
cattatagaaaagaggttgtaaaaattgcacattgcccaacattgctgactagggaagga
gatagaattcgcagtaatggaaagtttggaggccttcaaaataaagctccaccgatggac
aaactcagaggaatggtatttggtgcacccatgccaaaacattactatacgctctctggg
cagctagaacttcttcagcaataccgtacatcagtgataaaacttaattgtgcaaataag
gaccttgattcacaattacagtccctgaaaactccagagatgcaaaagaaaaaacaggaa
cttgccgagcaagagaaaaatctcaagctagtagagcagaaactgggtatgaccccatca
gataaaggctctgaatcatttcaaccaacaacacttgatttttcagacagccccattcct
cccaaaagaatgagaagagaaatggtaaaaaagttatatagtgcagaagaatggatctct
cctacaaagaagcaacagcagcagcaaatgcagacctctacatcagaatttaatggaaca
ccacggaagagaaaggcatag
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