Alligator mississippiensis (American alligator): 102572036
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Entry
102572036 CDS
T03087
Symbol
TRAF6
Name
(RefSeq) TNF receptor associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04010
MAPK signaling pathway
amj04120
Ubiquitin mediated proteolysis
amj04140
Autophagy - animal
amj04144
Endocytosis
amj04620
Toll-like receptor signaling pathway
amj04621
NOD-like receptor signaling pathway
amj04622
RIG-I-like receptor signaling pathway
amj05132
Salmonella infection
amj05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102572036 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102572036 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
102572036 (TRAF6)
04140 Autophagy - animal
102572036 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
102572036 (TRAF6)
04621 NOD-like receptor signaling pathway
102572036 (TRAF6)
04622 RIG-I-like receptor signaling pathway
102572036 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
102572036 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
102572036 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amj04131
]
102572036 (TRAF6)
04121 Ubiquitin system [BR:
amj04121
]
102572036 (TRAF6)
Enzymes [BR:
amj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102572036 (TRAF6)
Membrane trafficking [BR:
amj04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
102572036 (TRAF6)
Ubiquitin system [BR:
amj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
102572036 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
TRAF6_Z2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
Med21
RING_XB3-XBAT31
TRAF3_RING
SlyX
zf-RING_11
Sina_ZnF
PspA_IM30
ATG16
U-box
UPF0242
DUF16
Motif
Other DBs
NCBI-GeneID:
102572036
NCBI-ProteinID:
XP_006269674
LinkDB
All DBs
Position
Un
AA seq
545 aa
AA seq
DB search
MSLLQSDNSCGARELESGCCAAMASACSAGAKEDSASVSSGTGNAPNSFTEETQGYDVEF
DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPD
NFAKREILSLTVRCPNKGCRLKMELRHIEEHQLQCNFSCVECPQCLGFFQKNQMKEHMTQ
ECPRRQVCCPNCATSMAYEDKEHHEQHCPLANVFCEYCNTMLIRQQMPNHYDNDCPTAPV
PCTYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQTLRSISMTATVPVSFSNGPSFEPAL
FSHPSSSPYECNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQSINMVELKRTIRNL
EGKVAEMEAQQCNGIYIWKIENFSSLLKAQEEERPVVTHSPGFYTGKPGYKLCLRLHIQL
PNAQRCANFISLFVHTMQGEYDSYLPWPFQGTIRLSILDQSEGPERLNHEEVMEAKPELL
AFQRPTIHRNPKGFGYVTFMHLQALKQRTFVKDDTLLVRCEVVTRLDFNSLRREGFQPRS
TDGVV
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgctacaaagtgataacagctgtggagccagagaactggagagtggttgctgt
gcagccatggccagcgcatgcagcgctggagcaaaagaagacagtgcaagtgtcagcagt
gggactggaaatgcaccaaattccttcacggaagagacccagggatatgatgtagagttc
gatccgcccctggaaagtaaatacgagtgtcctatctgtttgatggctcttcgggaagca
gtgcagacaccatgcggacaccgcttttgcaaaggctgcattgtcaaatcaataagagat
gcaggtcacaaatgtccagtagacaatgaaattctacttgaaaatcaacttttccccgac
aactttgccaagagagaaatcctctcgctaacagtgagatgtcccaacaaagggtgccgt
ttgaagatggagctgagacatatagaggagcatcagttacagtgcaacttttcatgtgtg
gaatgcccacagtgcctgggcttcttccagaagaatcagatgaaagagcacatgacacag
gaatgtccacggcgacaagtctgctgtcccaactgtgccacatctatggcttatgaagat
aaagagcaccacgaacagcactgtccactggcaaatgtgttttgtgaatattgtaatact
atgcttattagacaacagatgcctaatcattatgataatgactgtcctacagccccagtt
ccgtgtacttacagtgcctttggatgtcctgaaaagatgcagagaaatgaattggcacgc
cacatgcaggaatttactcaggttcacatgagaatgatggctcagactctccgaagtatc
agtatgactgccacagttcctgtatccttctccaatggcccatcctttgagccagccctt
ttctcccacccttcatcttctccatatgagtgcaacccggaagtagagaatttcaaggag
accattcagcagttggaaggtcgcttggtaagacaagatcaccaaatcagagagctgatt
gctaaaatggaaactcagagtattaacatggttgagctcaaacgtactatccgaaaccta
gaggggaaagttgctgaaatggaggcacagcaatgtaatggcatttatatctggaagatt
gagaatttctcttcacttctgaaagcccaagaagaagaaaggcctgttgtgacacacagc
cctggcttctacactggaaaacctggctacaaactgtgtttgcgtctgcatatccagcta
ccaaatgctcagcgttgtgctaactttatatccctttttgtccatactatgcaaggggaa
tacgacagctatctgccttggccattccagggcaccatacggctttctattctggatcaa
tcagaaggacctgaaaggctgaatcatgaagaagtaatggaagccaaacctgagctgcta
gccttccagagaccaacaatccaccgcaacccaaagggttttggttacgtgactttcatg
cacctgcaagctctgaaacaaagaacctttgtaaaagatgatactctacttgtgcgctgt
gaagttgtaacacgattagattttaacagtctccggagggagggatttcagcctcgtagt
actgatggtgtggtgtag
DBGET
integrated database retrieval system
