Alligator mississippiensis (American alligator): 102573178
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Entry
102573178 CDS
T03087
Symbol
BRCA1
Name
(RefSeq) BRCA1, DNA repair associated
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03440
Homologous recombination
amj03460
Fanconi anemia pathway
amj04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102573178 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
102573178 (BRCA1)
03460 Fanconi anemia pathway
102573178 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
amj01009
]
102573178 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
amj04121
]
102573178 (BRCA1)
03036 Chromosome and associated proteins [BR:
amj03036
]
102573178 (BRCA1)
03400 DNA repair and recombination proteins [BR:
amj03400
]
102573178 (BRCA1)
Enzymes [BR:
amj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102573178 (BRCA1)
Protein phosphatases and associated proteins [BR:
amj01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102573178 (BRCA1)
Ubiquitin system [BR:
amj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102573178 (BRCA1)
Multi subunit type E3
BRCC complex
102573178 (BRCA1)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102573178 (BRCA1)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102573178 (BRCA1)
BRCA1-A complex
102573178 (BRCA1)
BRCA1-B complex
102573178 (BRCA1)
BRCA1-C complex
102573178 (BRCA1)
BRCA complex
102573178 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
102573178 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-Nse
BRCT_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-RING_5
zf-RING_6
zf-RING_10
zf-MIZ
BRCT_3
Prok-RING_4
zf-ANAPC11
Zf_2nd_IFT121
Motif
Other DBs
NCBI-GeneID:
102573178
NCBI-ProteinID:
XP_014464710
LinkDB
All DBs
Position
Un
AA seq
1877 aa
AA seq
DB search
MDFSVVTLGDVQNVLSAMQKNLECPICLEVIKEPVSTKCDHIFCRLCMFKLLSKKKKSLV
QCPLCKTEVTKRSLQENSRFKQLIEGLLKTIHAFELDSGVKFLNHQDFSKKPIETNSADT
LHKESCVIQSKGYRNRQKKVKENGQENLTLQGTITGVQLSGNMVKWSSPRNKRRKLESDK
IMYIEFGSDSSEDLFKKAGGSRVQDKEMFQTPPEKLEEELKYAENESPHNMQVTNLGGRE
ILLSDFRGECDFSEEGLGSSEIIQNISEDFQAAQVNLAEEHLKNNLCISASNVHAEPCDR
TANATSPQKKDSSLFSSGEEMSSVGALCISKSEEPGSQHSPKSQLNKNKETTSAVQHVKT
SETCEQKCDSLHEDISSLEQLLQPEAMPTDTLSQVSKKRLKKSIQKVNDWFSKSSEVLSC
SPQDAGAADIEEEGSCLSDRDSSISGKTDIMVNCLEVAVECENEKSLSKPSVHSIENKIF
GKTYQRDRKSNRHVNLGVVPQITEVEDVTSDVQHLDNSRNDRLKRKRKTVCGLQPGDFIK
KRDAKVVDEHDCLVPARGKAGDSSVVGGDPVCEKKRENTSAELPLEKGEFIFKNDVEKVI
GDCTDGEPELKDCDQRNAKKRCSSLMERNRHSARTKHTLQLVVNRNSSSPHQTELQIDSY
PSSEESKKDSEQRQVRRSRRLQLLTGEMTKETRRRDEPNETSRRQADKNDSFSSGFQRTV
LVHAPKCKDQAELQDILNHRVPLSDYNLKGTNLEANKVHGSPETSFTIMEIEKDSSNPPL
LQLQEANACSLLASADTQDSHSLLQPCSMNVEQTAGPVLNSSETKQCTATEPNKSKLHAC
SPKDNGCYTRYDPENFKKQKMTEAKSILELNTETEDSELDVQYLRNMFRHTKRLSFTLHS
GLVKESAIENTASEAEGKMSTNQIEYRYNSRDLKNDPMHLKKPSVGLTGVDERESKTCQT
AKDVSGNDTECRHIREHGSNASQVQSQEQLLSSARLFGAKIKDKSRLQKRKQPAEKTVSS
KLVRESELNLDLNQYNRSLSDRNNTEEPIFQGTGLSIINETGSSSESNQAEKTEVAENKQ
PVLNVQPESMLNCLAVCQQSPAEFSCKVSEKKCSEGEGKQVKSDKEQINQVANIGVPECL
ISEEALEQPIEDTSGFPALSETPDDLVFSAEDLKGNNSFCDADRKDISAVFVKADENALV
RGINSDSSSSKSRSQSFVQRSQRVVQKLQSSEEDSNEDEDLPCFQALIFGKSSSTHTQSQ
KQKMSVRRCSNPSAQMLALQSSSSGSDKVVQKMPEATLKEVCVSPSQESECSVSLFSSQS
NMSEDSANRPEDLRLVPSTKEKKNFSEGKEASPHENEELKGRKKSLQDEHQGDPNLELNI
GEPSGYDSEASHLGDSYGLSSQSEILTTQQKNDMQNNLKKLQQEMAVLEAVLEQHGSQGS
ELPCSSVEGATATGLMITARGAMLTSEADLNNRKICSSVGLPRDEFHGMPNHCFNSNSKG
LEEERSSASLLSTSKSHLLNKEARQHSFPKTLALEPNTPSQEGKSQQGDVALLLVQEAEE
QCNQYRKEPENATEQKSETKLNSAAILSSPCGNMSRIPNSSPLKFLKRLSQSQTAEATNG
SAIPCNIDDRKNTQGCELERRVFASAHVPHHRAGKENAKSPVVLSRKKMSIVASGLNQHE
FLLVQKFAWKTQSTLSNQITEGTTHVIMKTDMDLVCERTLKYFLGIAGRKWVVSYQWVIQ
SFKERRILYESDFEVRGDVINGRNHQGPKRARQSQAGKLFKDFEICCYGPFMDMNTENLE
WMVELCGASVVTQLHLFTHKAKHTAVVIVQPDAWVEDTGYRTIQQKCSATVVTREWVLDS
VACYERQEFDAYLVSQE
NT seq
5634 nt
NT seq
+upstream
nt +downstream
nt
atggacttctctgtggttactcttggagatgtgcaaaacgtactttcagctatgcagaag
aatttggaatgcccaatatgtttggaagtgataaaagagccagtctcaacaaaatgtgac
cacatattctgcagattatgtatgtttaaacttctcagcaaaaagaaaaaaagtctggta
cagtgtccactgtgtaaaactgaagttaccaaaagaagtctgcaggaaaattccagattt
aagcaactaattgaaggactgttgaaaacgatccatgcttttgaacttgactctggagtg
aaatttttaaaccatcaggatttttctaaaaaacccatagaaaccaattctgctgacacc
ctccataaagaaagttgtgtcatccaaagtaagggctacagaaacagacaaaaaaaagtt
aaagaaaatggacaagaaaatcttaccctgcagggaactatcactggtgtacagctttca
ggcaacatggtgaagtggagttccccaagaaacaaaaggagaaaactggaatctgataaa
ataatgtacattgaatttggttctgattcttctgaagatctctttaaaaaggcaggtggt
agcagggttcaagacaaagaaatgtttcagactccacctgaaaagcttgaagaagaactg
aagtatgctgagaatgaaagtccacacaacatgcaagttaccaacctaggtggaagagaa
atacttctttcagacttcagaggtgaatgtgatttctcagaggaaggcttaggaagcagt
gaaatcattcaaaatatcagtgaagacttccaagctgctcaagtgaatttggctgaagag
catttaaagaataatctctgcatttctgcctcaaacgtgcatgcagagccatgtgacaga
acagccaatgctacatctccacagaaaaaggacagtagtttattcagcagtggagaagaa
atgagttcagtgggagctctgtgcatcagtaaaagtgaagagcctggttcacagcacagc
cctaaaagccaattgaataaaaacaaggaaacaactagtgctgtacagcatgtaaaaact
tctgaaacatgtgaacaaaagtgtgactccttacatgaagacatttcttctctggagcag
ttactgcagcctgaagctatgcccactgatactttgagccaagtttctaagaaaagactg
aagaaaagcattcaaaaagtcaatgattggttttcaaaaagcagtgaagtgctctcttgt
tcccctcaggatgctggggcagctgacatagaagaggaaggttcatgtttgtcagacaga
gattcctctatttcggggaagactgacataatggtaaactgcttggaagttgcagtggaa
tgtgaaaatgaaaagagtttgtcaaaacccagtgtgcatagcattgaaaataaaatattt
gggaaaacttatcagagagatagaaagtcaaatcggcatgttaatcttggagtagtaccc
cagattacagaagtggaagatgttacttctgatgtgcagcacttggataattccagaaat
gacagattaaagcgaaaaagaaagactgtctgtggtctgcaacctggagacttcatcaag
aaaagagatgcaaaggttgtagatgagcatgattgccttgttcctgcgaggggaaaagct
ggtgattcttctgttgttgggggagatccagtttgtgagaaaaaaagggaaaatacctca
gcagaactgcctctcgagaaaggagaattcatctttaaaaatgatgttgagaaggtaatt
ggtgactgcactgatggagagccagaattaaaggactgtgaccaaaggaatgctaaaaaa
agatgtagctctctaatggagagaaacagacattcagccagaaccaagcatactctacag
ctggtagtgaacagaaactcaagttctcctcatcagactgagctgcagattgatagctac
ccaagtagtgaagaatcaaaaaaagattctgaacagagacaagttaggcgcagcagaagg
cttcagttactgactggggaaatgacgaaagaaaccaggagaagagatgagccaaatgaa
acatcaagaaggcaagccgataaaaatgatagtttttcttctggattccagagaactgtc
ttggtccatgcccctaaatgcaaagaccaggctgaactgcaggatatattgaaccatagg
gtacctttgtcagactataatttgaaaggtactaaccttgaagcaaacaaggtacacggt
agtcctgaaacctcttttaccattatggaaattgaaaaagattcctcaaatcccccacta
ctacaacttcaggaagcaaatgcttgttctctgttggccagtgcagacactcaagacagc
cattcactcctgcagccatgttccatgaatgttgagcaaactgctggcccagtactaaat
tcatctgaaactaagcagtgcacagctacagaacccaacaagagcaagttacatgcttgt
tcacccaaggacaatggatgttatacaagatatgatccagaaaacttcaaaaaacaaaag
atgactgaagcgaaaagcattttagagttgaacacagaaactgaagatagtgagttagat
gtacagtacctccgtaatatgtttagacatacaaaacgattgtcatttactcttcattct
ggtctagtgaaggaatctgcaatagaaaacactgcttctgaagctgaagggaagatgagt
actaaccagatagaatacagatataacagcagagatttaaaaaatgatcctatgcattta
aaaaaaccatctgtaggtctgactggagtcgatgagagagagtctaaaacctgccaaaca
gctaaagatgtctctggaaatgatactgaatgcagacacattagggagcatggttcaaat
gcttcacaagtacaaagtcaagaacaacttttgtcttcagcgaggttatttggtgccaaa
attaaagataagagcagactgcaaaaaagaaaacagccagctgaaaagacagtgtcctcc
aaactagtgagagaaagtgagttaaatttggacctaaaccaatataatagaagtctaagt
gatcggaataatacagaagagcccattttccaaggaactggtttaagcataattaacgaa
acaggctccagttcagaaagcaatcaagcagaaaaaactgaagtagctgaaaacaaacag
ccagtattaaatgttcagcctgaatctatgctgaattgtctagcagtttgtcaacaaagt
cctgctgaatttagttgcaaagtctcagaaaagaaatgtagtgagggggagggcaaacaa
gtaaagagtgataaagaacaaataaaccaagttgccaacataggggtacctgagtgttta
atttcagaagaggctctggagcaacccattgaggacaccagtggttttccagcactatct
gagacccctgatgacttagtgttttctgctgaagaccttaaaggtaataacagcttttgt
gatgctgacaggaaagacatttctgctgtgtttgttaaagcagatgagaatgccctggta
agaggcatcaatagtgacagcagtagctctaagtctaggtctcagagctttgttcagaga
tctcaaagagtggtgcagaaactacagtcctctgaagaggattctaatgaggatgaagac
ctaccatgttttcaggcattaatatttggcaagtcatcaagcacacacactcaatcccaa
aaacagaagatgtctgtgagaagatgttcaaatccctcagcacagatgttagcactgcaa
agtagcagcagtggcagtgacaaagttgtacagaagatgcctgaggccaccttaaaagag
gtgtgtgtttctccaagccaagaatctgaatgctctgttagcttattttcttcccagtcc
aacatgtcagaagattcagctaacagaccagaagacttgaggctagtccctagtaccaaa
gagaagaaaaacttcagtgaaggcaaagaagctagtccacatgaaaatgaagagctgaaa
ggaagaaaaaaatctttgcaagatgaacaccagggagacccaaatttggaattaaatata
ggtgagccatctggatatgatagtgaagccagtcatctaggagattcatatggattatcc
tctcagagcgagattcttactacacagcagaaaaatgacatgcaaaacaacttaaaaaaa
cttcagcaggaaatggctgtgcttgaagcagtgctagaacagcatggaagtcagggctct
gaattgccatgttccagtgtggaaggagcaactgcaacgggactgatgataacagcaaga
ggagcaatgttaacttcagaagcagatctcaacaatcgcaaaatctgtagttcagtagga
cttccacgtgatgaattccatggaatgccaaatcattgtttcaacagtaacagcaaagga
ctagaagaggaaaggtcttcagcttcacttctttccacctctaaatctcacttattgaat
aaggaagctcggcaacatagctttccaaagactcttgcactggaacccaacactccttct
caagaaggaaagtcccaacaaggtgatgtggcactgctgctagtacaagaggcagaggaa
cagtgtaatcagtacaggaaagaaccagaaaatgcaacagagcagaagtctgaaacaaaa
ctaaacagtgctgctatcctctccagtccttgtggaaacatgagcaggattccaaacagc
tcccccttgaagtttcttaaaaggctttcccaaagccaaactgcagaagcaacaaatggt
tctgccataccttgcaatattgatgataggaagaatactcagggatgtgaactggagagg
agagtatttgcctctgcacatgttccacaccatagagctggaaaagaaaatgccaaaagc
ccagttgtgctcagcaggaaaaaaatgtcaattgtagcatcgggtctcaaccagcatgaa
tttttactggtgcagaagtttgcctggaaaacccagagcactttatctaatcaaatcact
gaaggaacaacccatgtcataatgaaaacagatatggatctagtgtgtgagcgtacacta
aagtactttttgggcatcgcaggaagaaaatgggtggttagctatcagtgggttattcaa
tcttttaaggaaagaagaatactttatgagtcagactttgaagtgagaggagatgtaatc
aatgggagaaaccaccaaggtcctaagagagctagacagtcccaggctggaaagctcttc
aaagactttgagatctgctgctatgggcctttcatggatatgaacacagaaaatttagag
tggatggtagagctttgtggtgcctctgtggtgactcagcttcatctattcactcataag
gcaaaacatactgcagtagtcattgtgcagccagatgcttgggtggaagacacaggctac
agaacaattcagcagaagtgcagtgctactgtggtgaccagagagtgggtgttagacagt
gttgcatgctatgagcgccaggagtttgatgcctaccttgtgtcccaggaataa
DBGET
integrated database retrieval system
