Alligator mississippiensis (American alligator): 106736919
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Entry
106736919 CDS
T03087
Symbol
KDM2B, KDM2BB
Name
(RefSeq) lysine demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
106736919 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amj03000
]
106736919 (KDM2B)
04121 Ubiquitin system [BR:
amj04121
]
106736919 (KDM2B)
03036 Chromosome and associated proteins [BR:
amj03036
]
106736919 (KDM2B)
Enzymes [BR:
amj01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
106736919 (KDM2B)
Transcription factors [BR:
amj03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
106736919 (KDM2B)
Ubiquitin system [BR:
amj04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
106736919 (KDM2B)
Chromosome and associated proteins [BR:
amj03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
106736919 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
106736919 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
106736919
NCBI-ProteinID:
XP_014450254
LinkDB
All DBs
Position
Un
AA seq
1270 aa
AA seq
DB search
MKLSKKMEAEKDSGRRLRSIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVH
AMEGKDFTFEYVQREALRIPLIFRSKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYDIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSIDSFSSDSWLDMDEESCDAHPREEKDDSLDQNPKPVGDGSSSPNSTH
SEGKEGAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKTILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGTASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQ
KINRDNKEVTDAAKRKSECEETPRRKSEEHAKKSPVDSISRRKSDEVHLRRKRKFEKPQE
PAMRKRLKLGKEEKLFRKKTLSFQRRSWKATDDRPTVVKPLRRLKQEPEEDLPEAPPKSK
ESDQSRSSSPTAGPSTESAEPRDKKKFKIRRKRRLPNKELSKELSKELNQEIQKTENSLA
NENHQPIKSEPESENEEPKRALNNSERHHKFSKGLNGTPRELRHQLMPSLRSNLRGIARP
PPSLSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFGYLSHRDLCICM
RVCKTWNRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLIN
RLPGLRDLLLSGCSWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQI
DNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTT
RDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQ
VEEKLLQKLS
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcagagaaagactctggaagaagattgcgctctatt
ggtagaaggaggtacgatgagaacgaggacctctccgacgtggaggagattgtcagcatc
aggagttttaatttggaggagaagttaaagagtaaaatgtatcatggggatttcgtgcat
gccatggaagggaaagatttcacttttgagtacgtgcaaagagaagctctcaggattccc
cttattttcagaagtaaagatggacttggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagttactagtgggaagccgtcggattgtggatgtaatggatgtgaacaca
cagagaggggttgagatgagcatgtcccagttcgtgaggtattatgaaacaccagaggcc
cagcgtgagaagctttacaacgtcatcagtctggagttcagtcacaccaagttggagaac
attgtcaagcgccccaatgtggtggatttagtcgactgggtggataacatgtggccgcaa
catttgaaggagagacagacagatgctaccaatgccatttcagagatgaaataccctaaa
gtgaaaaagtattgtttgatgagcgtgaaaggatgcttcactgattttcacattgatttt
ggtggcacttcagtgtggtatcacgttttccgaggagggaagatcttctggctgattccg
cctactctgcagaatctagaactttatgaagaatgggttctctcgggaaagcaaagtgat
atctttctgggagacagggtggaacgatgccaaagaattgagttgaaacaaggctataca
ttttttattccttcagggtggatacatgcagtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgacattgag
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgtcacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcatagacagcttctcatcagat
tcctggttagacatggatgaagaatcttgtgatgcccacccccgggaggagaaggatgac
agcttggatcagaaccccaaacccgtgggtgacggctcctcctcgcccaacagcacacac
tccgaggggaaggaaggggctgggaggaagcagaaagccacagtaatgcggtacctcaaa
agaactttgtccaatgagtcagatgacagcgtgaagtcgacaacccccacggactatccc
aaaacgcccacagggtcaccagccacagaagtctccaccaaatggactcacctcacagag
tttgaattgaagggtttgaaagccctggttgaaaagcttgaatccctcccagagaacaag
aagtgcgttccagaaggcattgaggatccccaggctctgctggaggatatgaagaccatt
ctgaaggaacatgcagatgacgatcagaaccttgccatttcgggggtccccgttgtaagc
tggcctaagaagaccacaaagaacagagcagtcggacggcccaaagggaagctgggcact
gcctctgcagtgaagctcgcggcgaatcggacgacggcaggagcgcgccggaggaggacg
cgatgccgcaagtgcgaggcgtgtctgcggacagagtgcggcgagtgtcacttctgcaaa
gacatgaagaagttcggggggcctggcaggatgaagcagtcctgcatcatgaggcagtgc
attgcaccggtgctgcctcatactgctgtgtgtctggtgtgcggagaagctgggaaggag
gacacggtggaagaggaggagagcaagtttaatctcatgctaatggagtgttctatttgt
aatgaaatcatacacccaggatgccttaaggtgaaggagtcggacggcgtggttaacgac
gagctgcccaactgctgggagtgccccaagtgcaaccacgcagggaaaactgggaaacaa
aagcgcggaccaggattcaaatacgcatccaatctcccaggctcactgctgaaggaacag
aagataaaccgagacaacaaggaagttacggatgctgcaaagcggaaaagcgaatgtgaa
gagacccccaggcggaagtcagaggaacatgccaagaagtctcctgttgactccatctcg
aggagaaagtcggacgaggtgcatctgcgaaggaaaaggaaatttgagaaaccccaagag
cctgctatgaggaaacggctaaaacttggaaaagaagagaaactcttcaggaaaaagact
ctttcttttcagaggcgatcgtggaaggcgacagacgaccgacccactgtggtcaagccc
ctgcgacgtctgaaacaggagcctgaggaggacctgccagaggcacctccgaaatccaag
gagagtgaccagtcgcgatcaagctcccccaccgcggggcccagcacggagagcgccgag
cccagggacaagaagaagttcaagatacggcggaaaaggcggctcccgaataaggaactg
agcaaagagctcagcaaggagctcaaccaggagatccaaaaaaccgagaacagccttgcc
aacgagaaccatcagcccatcaagtcagaaccggagagcgagaacgaggagcccaagcgg
gcactgaacaacagcgagagacaccacaagttcagcaaagggctgaacgggactcctagg
gagctgcggcaccagctcatgcccagcctgcggagcaacctgcggggcattgcccgcccg
cccccttcgctctctcctcccaagtgcatccagatggaacgccatgtcatccgcccaccc
cccatcagcccccctccggactcactgcccttggacgatggggcagcccacgtgatgcag
agggaagtctggatggctgtctttggctacctcagtcatagagacttgtgcatctgtatg
cgagtgtgcaagacctggaacagatggtgctgcgataaacgactatggaccaaaatagat
ctgaaccattgtaaatccataactccgctcatgctcagtggtatcatcaggagacagcct
gtaacccttgaccttagctggacaaacatatccaaaaagcagctgagctggctcatcaat
aggctcccaggtctgcgagacctgctgttatcagggtgctcatggatagcagtgtcagca
ctttgtagttccagttgccctttgctccgaaccctggacgtccagtgggcagaaggatta
aaagacgcacaaatgagagacctcttgtcaccgccaacagataaccggccaggtcagatc
gacaaccggagtaaactgcggaacatagttgagctgcgtttggctggtctggatattaca
gacgcttctttgaggttgatcataaggcacatgcccctgctttccaaactcaatcttagt
tactgtaaccacgtgaccgatcagtcgatcaatctgttgactgcggtaggaaccaccacg
cgggattccttaacagaaatcaacttatcagactgcaataaggttactgaccagtgcctg
tcttactttaaacgctgcggaaacatctgtcagatcgacttgaggtactgcaagcaagtg
acaaaggaaggctgtgagcagttcatagcggaaatgtcagtaagtgttcagttcggtcag
gtggaagagaaacttctgcagaaactgagttag
DBGET
integrated database retrieval system
