Ailuropoda melanoleuca (giant panda): 100466431
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Entry
100466431 CDS
T01329
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
aml
Ailuropoda melanoleuca (giant panda)
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aml03036
]
100466431 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
aml03400
]
100466431 (SMCHD1)
Chromosome and associated proteins [BR:
aml03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100466431 (SMCHD1)
DNA repair and recombination proteins [BR:
aml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
100466431 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
100466431
NCBI-ProteinID:
XP_002926111
Ensembl:
ENSAMEG00000010022
LinkDB
All DBs
Position
14:complement(55607617..55762871)
Genome browser
AA seq
2002 aa
AA seq
DB search
MAAADGGGPSVGTGEDGGGDGCRTVYLFDRREEESELGDRVLQVEERSDYARFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGVRGIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMITKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLILEEKEKDSFTAVVITGVQQEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKH
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGIV
EGIIRYHPFLYDRETYPDDPCFPSKLKEEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTSFKGVITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEVKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLMDPPFRVGVPFNI
PLEFQDEFGHTCQLGNDIQPVFEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGKNFN
LKVILPGLKEDTQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNITTQ
PKLIVHCKFSGAPNLPIYVVDCSSSGTSILTGSAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHI
TSTLADKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSALGIAGIGLDS
SHLKTTFQENTQSISVKGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKESIPVINGRELQNPLIAQLCDQWDNPAPVSQVKISLMKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHMMQVRAIYNKNIIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWQLSNSGNRPPANAETFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPKIQPATPAVS
NVRSVASRTLVKDLHLTITDDYNNHTGIDLVGTIVATIKGSNEEDTDTPLFIGKVRTLEF
PFVKGSAEITNLVLAENSPGRDSTEYFIIFEPQLPALSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQLSKNITMYRSLFEASNQLLDEMKCQVEEAKLKEAQLQNELKTHNIDIPTTQ
QMPHIEALLKRKLSEQEELRKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGRLYFKP
IGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLVLGEQIDLLQQYRTSVNKLNSVI
EDLNRQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHTPKVEMTDCP
IPPKRMRREASRQNRIITKSDV
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggacggcggcgggccctccgtggggaccggagaggacggcggaggcgac
ggctgcaggacggtgtacttgtttgaccggcgcgaggaggagtccgagctcggggaccgg
gtgctgcaggtcgaggagcgctcggactacgcaaggttccgcgcctctgtgtgtcagaca
cttggcatttcacctgaagagaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgacactgttaaagatggagtcactctatacctgctacagtcagtc
aatcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgccattt
gctcttgcagaattaattgacaattcattgtctgctacttctagaaacactggtgttaga
ggaatacagatcaaattgctttttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgtccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataaccaaacctgcagattcccaagatgttcat
gaacttgtgctttctaaagaagattttgagaagaaggagaaaaacaaagaggcaatatat
agtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatcttagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggagtacaacaagaacatatacagtacttgaaaaattatttccttctttggaca
agacagttagcgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacat
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatagaagatgacatgcagacgttgtat
ataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagatggtatagtg
gaagggattattcgatatcaccctttcttatatgatagagaaacttaccctgatgatcca
tgctttccatcaaaattgaaagaggaagatgatgatgatgattgtttcatacttgagaaa
gcagcaagagggaaaagacctatttttgaatgtttttggaatggacggctaataccatat
acatctgttgaagactttgactggtgtactcctccaaagaagagagggcttgcaccaatt
gaatgttacaatagaatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgccttatggctg
aaggactgtcatgaaaagtatgacaaacagataaaatttacatcttttaaaggagtaatt
acacgtcctgatcttccttctaaaaagcagggcccctgggcgacatactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagacacttcctctc
ttctatggaagcatagtaaaattttttctttatggtgatcatgatggagaagtatatgcc
acaggaggagaggttcagattgcaatggaacctcaggcgctgtatgatgaagtaaaaact
gtgccaattgcaaagctcgataggacagttgctgagaaagctgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattaggcctgctggaacccccattggtgcattaagaattgaaatactg
aataaaaaaggggaagcaatgcaaaagcttccaggaacaagtcacggagggtcaaagaaa
ctcctggttgagctcaaagttatattacattcttcaagtggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcag
aagttggggaattatacattgaaattacaagttgtattgaatgaaagtaatgcagacact
tacgcaggaagaccactaccatcaaaagcaattaaattttctgttaaagagggtaaacca
gagaaattttcatttggtcttatggatcctccttttcgtgttggagtcccattcaatatc
cctctggagtttcaggatgaatttggtcatacttgtcaactaggaaatgatattcagcca
gtttttgaagccagtggtttatctttacattatgaagaaataaccaaaggaccgaattgt
gtgattcgaggggttacagctaagggccctgtaaactcttgtcaaggcaagaattttaat
ttgaaggttattctgccgggtttaaaagaagacacacagattttaaaaattagattactg
ccaggtcctcctcgtcgtttgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaatataacaacacaa
ccaaaattgattgttcattgtaagttttcaggtgccccaaaccttccaatctacgttgta
gattgcagcagttctggaaccagtattttaacaggatctgcaattcaagtacagaacatt
aaaaaagaccagactcttaaagcaaaaattgaaatacctagttgtaaagatgtggcacct
gtggagaagactattaagttgcttcctagtagccatgttgccagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggc
gatattatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaattcatata
acatcgactttagcagataaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtctgcttcctgatgtacaagtaccaacatctgtgaaagatatgcgctat
tgccaggtttcattccaggatgatcatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgagcctaaacatctaaaatgtgagttaaaaggaggaaaaacagtacagatg
ggccaagagcttcaaggagaaatagttgtaatagttacagatcagtatggaaatcagatt
caggcattttcaccaagttctttatctgccttgggaattgctgggattggacttgatagc
tctcatttgaaaactacctttcaggaaaatacacaaagtataagtgtaaaaggcatcaaa
tttattccaggccctcctggaaataaggatctttgttttacttggcgtgaattttctgac
tttattcgagtgcagctaatttctggaccaccagcaaaacttctccttatagactggcca
gaattaaaggagtccattccagtgattaatggaagagaactacagaatcctctcattgct
caactttgtgatcagtgggataatccagcacctgtgtcacaggttaaaataagtctcatg
aaagctaacaatttaaagctcactccttcaaaccaacagcataaaacagatgaaaggggc
agggctaatttgggagtattcagtgtttatgcccctagaggagaacatatgatgcaggtt
agagccatctataacaagaatatcatagagggacctataattaagttaatgattcttcca
gaccctgaaaaacctattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
gggggtattttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aacattaatccagcacgtatctccatgaaaatgtggcagctgtctaacagtgggaaccga
ccaccagcaaatgcagaaacatttagttgtaataaaataaaagataatgacaaagaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtgggaacatactgtatccag
tttgggtttatgatggataaagcaaatattcttaacagtgaacagattatagttgatgtt
ctacctaatcagcctgtgaagttagttcctaaaattcagccagctacaccagctgtttca
aatgttcgctcagttgccagtaggactttggtcaaagatttacatcttactattacggat
gactacaacaatcatactggaattgatttggttggcactatagtagctaccattaaaggt
tctaatgaggaagatacagatacaccactctttatcgggaaagtgagaacactcgaattt
ccctttgtgaaaggatcagctgaaattacgaatctagtgctggcggaaaatagtcctgga
agggatagtactgaatattttattatatttgagcctcagctaccagctctatcgagaaca
ttagaaccatatatcctaccatttatgttttacaatgatgttaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccagttatctaagaatattacaatgtatagaagttta
tttgaagccagcaatcagcttcttgatgaaatgaagtgccaagtcgaagaagcaaaatta
aaagaggctcagttgcaaaatgaactaaaaacacataatattgacattcctacaacacag
cagatgccacacattgaagcacttttgaaaagaaagttatcagaacaggaagaactgagg
aaaaaacctagaagatcatgtactcttccaaactatactaaaggcagtggagatgttttg
ggaaagattgcacacctggcacaaattgaagatgatagagctgcaatggttatttcttgg
catctggcaagtgacatggactgtgttgtcaccctgaccactgatgctgcacgtcgtatc
tatgatgaaacccaaggtcgtcagcaggtgttgcccctggattctatttataagaagact
cttccagattggaaaagacctctacctcattaccgaaatggaagattgtattttaaaccc
attggagatccagtctttgcccgagatttgttaacatttccagataatgtagaacattgt
gaaacagtatttggtatgctgttaggagacaccattattttggataatttggatgctgcc
aatcattacagaaaagaggttgttaaaattacacactgtcctacactgctcaccagagat
ggagatcgcattcgaagtaacggaaagtttgggggccttcagaataaagctcctccaatg
gataaacttcggggaatggtatttggagctccaataccaaaacagtgcctggtcttaggg
gaacaaatagatcttcttcaacagtatcgtacttctgtgaacaagttgaacagtgtgatc
gaggaccttaaccgtcagttagagtaccttcacactcctgatatgaagaagaaaaaacaa
gaacttgatgaacaagagaaaaatctgaaactaattgagcaaaaactaggtatgactccc
acacgtaagtgtaatgactcattgcgccatacaccaaaggttgaaatgacagattgtcca
attcctcctaaaagaatgagaagagaagcatcaagacaaaataggattataaccaaatca
gatgtgtga
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integrated database retrieval system
