Ailuropoda melanoleuca (giant panda): 100467038
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Entry
100467038 CDS
T01329
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
100467038 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aml03000
]
100467038 (KDM2B)
04121 Ubiquitin system [BR:
aml04121
]
100467038 (KDM2B)
03036 Chromosome and associated proteins [BR:
aml03036
]
100467038 (KDM2B)
Enzymes [BR:
aml01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
100467038 (KDM2B)
Transcription factors [BR:
aml03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
100467038 (KDM2B)
Ubiquitin system [BR:
aml04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
100467038 (KDM2B)
Chromosome and associated proteins [BR:
aml03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
100467038 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
100467038 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
JHD
JmjC
Cupin_8
LRR_At1g61320_AtMIF1
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
100467038
NCBI-ProteinID:
XP_034493790
Ensembl:
ENSAMEG00000014308
LinkDB
All DBs
Position
12:7193961..7322595
Genome browser
AA seq
1123 aa
AA seq
DB search
MSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDR
VERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQ
PKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRESMLIDAPRKPSIDGFSSDSWLEME
EESCEQQPQEEEKEEEEEEEEEEEEGADKGPKPPADGPPSPTSTPSEDQEASGKKPKAPA
MRFLQRTLSNESEESVKSTTVPTDYPKTPTGSPATGVSTKWTHLTEFELKGLKALVEKLE
SLPENKKCVPEGIEDPQALLEGVKNVLKEHADDDPSLAITGVPVVTWPKKTPKNRAVGRP
KGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQS
CIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKES
EGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAK
RRSECEEVPRRRSDEHPKKVPPDGILRRKSDDVHLRRKRKYEKPQELSGRKRASTLQTSP
GSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNAEDRMALANKP
LRRFKQEPEDDLPEAPPKARESDHSRSSSPTAGPSTEGAEGPEEKKKVKIRRKRRLPTKE
LSKELSKELNQEIQKTENSLANENHQPIKSEPESESEEPKRPLGLCERPHRFSKGLTGTP
RELRHQLGPGLRSPPRVISRPPPSVSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVM
HREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLMLSGIIRRQ
PVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSSSCPLLRTLDVQWVEG
LKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLHL
SYCNHVTDQSINLLTAVGTTTRDSLTEINLSESNPEPFDTSSFNCNKVTDQCLSFFKRCG
NICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgaaaggctgtttcactgacttccacatcgacttcggaggcacgtctgtttgg
taccatgttttccggggtgggaagatcttttggctgattcctccaaccctgcacaatttg
gcactgtatgaggagtgggtgctgtcaggcaaacagagtgacatcttcctgggagaccgc
gtggagcgatgccaaagaattgagctgaaacagggctacacgtttttcatcccttccggt
tggatccatgcagtctacaccccggtagactccctggtatttggcggaaacatcctgcac
agctttaacgtgcccatgcagctgcggatctacgagatcgaggacagaacacgggtgcag
cccaaatttcgttaccccttctactatgagatgtgctggtatgtcttggaaagatatgtg
tactgtgtgacccagcggtcctacctcactcaggaataccagagagaatcaatgcttatt
gatgcgcctagaaagcccagcatagacggcttctcatctgattcctggctggagatggag
gaggagtcctgtgagcagcagcctcaagaggaggagaaggaggaggaagaagaggaggag
gaagaggaagaggagggtgcagataaggggcccaagccccccgccgatggccctccgtcg
cccaccagcaccccctcagaggaccaggaagcctctgggaagaagcccaaagcacctgcc
atgcggttcctccaaaggactttgtctaacgagtcggaggaaagtgtgaagtccacgacg
gtgcccacagactaccccaagacgcccactggctcccctgccacaggggtctccaccaag
tggacccacctcactgagtttgagctgaagggcctgaaagcgctggtggagaaactggaa
tccctcccagagaacaagaagtgtgtccctgagggcatcgaggacccccaggcactcctg
gagggcgtgaagaatgtcctgaaggagcatgcggatgacgaccccagtctggccatcact
ggggtccctgtagtcacttggccaaagaagactccaaagaaccgggcggtaggtcggccc
aaggggaagctgggcccggcctccgccgtgaagttggccgccaaccggacaacggcggga
gctcgccggcgccggacgcgatgccgcaagtgcgaggcctgcctgcggaccgagtgcgga
gagtgccacttctgcaaggacatgaagaagttcgggggccccgggcggatgaagcagagc
tgcatcatgcggcagtgcatcgcgccagtgctgccccacaccgccgtgtgcctggtgtgt
ggcgaggccgggaaggaagacaccgtggaagaggaagaaggaaagtttaacctcatgctc
atggagtgctccatctgcaatgaaatcatccaccctggatgccttaagattaaggagtca
gagggcgtggtcaacgatgagcttccaaactgctgggagtgtccaaagtgtaaccacgcc
ggcaagaccgggaaacaaaagcgtggccctggctttaagtatgcctccaacctgcctggc
tccctgctcaaggagcagaagatgaaccgggacaacaaggaagggcaggagcctgccaag
cggaggagtgagtgtgaggaagtgcctcggcgcaggtcagacgaacaccccaagaaggtg
cccccggatggcatcctgcgccgaaagtcggacgacgtgcacctgaggaggaagcggaaa
tacgagaagccccaagagctgagtggacgcaagcgagcctcgacgcttcaaacgtccccc
ggttcctcctctcacctctcgccgaggccccctctaggcagcagcctcagcccctggtgg
agatccagtctcacttacttccaacagcagctaaaacctggcaaagaagataagcttttc
aggaaaaagcggcggtcttggaagaacgccgaggaccggatggctcttgccaacaagcct
ctccgacgcttcaagcaggagccggaggatgacctgcccgaggcgccccccaaagcccgg
gaaagcgaccactcccgctccagctcccctactgctgggcccagcacagagggggcagag
ggccctgaggagaagaaaaaggtaaagatacgcaggaaaaggcggcttcccaccaaggag
ctgagcaaggaactaagcaaggagctgaaccaagagatccagaagacagagaacagcctg
gccaacgagaaccaccagcccatcaagtcagagcccgagagtgagagcgaggagcccaag
cggcccctgggcctctgtgagcgcccccaccgcttcagcaaggggctcaccggcaccccc
cgggagctgcggcaccagctggggcctggcctgcgcagcccaccccgtgtcatctcccgg
ccccctccctctgtgtccccgcccaagtgcatccagatggagcgacacgtgattcggccg
ccccccattagccccccgcctgactcgctgcccctggatgatggggcagcccacgtcatg
cacagggaggtgtggatggccgtcttcagctacctcagccaccaagacttgtgtgtctgc
atgcgggtctgcaggacctggaaccgctggtgctgcgataagcggttatggacccgcatc
gacctgaaccactgcaagtccatcacacccctgatgctgagtggcatcatccggcggcag
cctgtctccctggacctcagctggaccaatatctccaagaaacagctgagctggctcatc
aaccggttgcctgggctccgagacttggtgctgtcgggctgctcgtggatcgctgtctca
gctctctgtagctctagctgtccattgctccggaccctggatgtccagtgggtagaagga
ctaaaggatgcccagatgcgggatctcctgtccccacccacagataacaggccaggtcag
atggacaatcggagcaagctccggaacatcgtggagctgcgtctagcaggcctggacatc
acggacgcctccctgcggctcatcatacgccacatgcccctgctctccaagctccacctt
agttactgtaatcatgttaccgaccagtccatcaacctgctcactgctgtgggcaccacc
acccgagactccttaaccgaaatcaacctatcagagtccaatccagaaccatttgatact
tcatccttcaactgcaataaggttactgaccagtgcctgtccttcttcaaacgctgtgga
aatatctgtcatattgacctgaggtactgcaagcaggttaccaaggaaggctgtgagcag
ttcatagctgaaatgtctgtgagtgtccagtttgggcaagtggaagaaaaactcctgcag
aaactgagttag
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integrated database retrieval system
