Ailuropoda melanoleuca (giant panda): 100483249
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Entry
100483249 CDS
T01329
Symbol
SLIT1
Name
(RefSeq) LOW QUALITY PROTEIN: slit homolog 1 protein
KO
K06838
slit 1
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04360
Axon guidance
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
100483249 (SLIT1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aml00536
]
100483249 (SLIT1)
Glycosaminoglycan binding proteins [BR:
aml00536
]
Heparan sulfate / Heparin
Axon guidance molecules
100483249 (SLIT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
hEGF
LRRCT
LRRNT
LRR_1
LRR_9
EGF_TEN
LRR_14
EGF_DL_JAG
EGF_Teneurin
EGF_3
EGF_2
LRR_EndoS
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100483249
NCBI-ProteinID:
XP_011220303
Ensembl:
ENSAMEG00000000150
LinkDB
All DBs
Position
6:complement(98930107..99094016)
Genome browser
AA seq
1534 aa
AA seq
DB search
MALTPRRGPSAGLVRPELWLLLWAAAWRLGATACPALCTCTGTTVDCHGTGLQAIPKNIP
RNTERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGVVERGAFDDMKELERLRLNRNQ
LHLLPELLFQNNQALSRLDLSENTIQAIPRKAFRGATDLKNLQLDKNQISCIEEGAFRAL
RGLEVLTLNNNNISTIPVSSFNHMPKLRTFRLHSNRLFCDCHLAWLSQWLRQRPTIGLFT
QCSGPASLRGLNVAEVQKSEFSCSGQGEAGRVPSCTLSSGSCPAMCTCSNGIVDCRGKGL
TAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLN
SLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCVRPDAFQDLQNLSLLSLYDNKIQSL
AKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETSGARCASPRRLANKRIGQI
KSKKFRCSAKEQYFIPGTEDYQLNSECSSDAVCPHKCRCEASLAECSSLKLTKIPERIPQ
STAELRLNNNEISILEATGIFKKLTHLKKINLSNNKVSEIEDGAFEGAASVSELHLTANQ
LESIRSGMFRGLDGLRTLMLRNNRISCIHNDSFTGLRNVRLLSLYDNQIATISPGAFDTL
QALSTLNLLANPFNCNCQLAWLGDWLRRRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCE
EGQEEGGCLPRPQCPQECACLDTVVRCSNKHLQVLPKGIPKNVTELYLDGNQFTLVPGQL
STFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLH
GNDISSLREGIFTDATSLSHLAIGANPLYCDCHLRWLSGWVKTGYKEPGIARCAGPPDME
GKLLLTTPAKKFECQGPPTLAVQAKCDPCLSSPCQNQGTCNNDPLEVYRCACSSGYKGRN
CEVSLDSCSSSPCGNGGTCRPQEGEDTGFMCSCPTGFEGPTCEVNTDDCVAHTCANGGIC
VDGVGNYSCRCPLQYTGRACEQLVDFCSPDLNPCQHEAQCVGTPDGPRCECAPGYAGDNC
SENQDDCRDHRCQHGAQCVDEVNSYSCLCAEGYSGQFCEAPPRPPTPRSPCEGTECQNGA
NCVDQGGGPVCQCLPGFGGPECEKLLSVNFVDRDTYLQFTDLQNWPRANITLQVSTAEDN
GILLYNGDNDHIAVELYQGHVRVSYDPGSYPSSAIYSAETINDGQFHTVELVTFDQMVNL
SIDGGSPMTMDNFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQILNGTSFHGCIRNLYIN
NELQDFTKTRMKPGVVPGCEPCRKLYCLHGICQPNATPGPVCHCEAGWGGLHCDQPADGP
CHGHKCVHGKCVPLDALSYSCQCQDGYSGALCNQAGAPADPCGGLQCLHGHCQALATKGA
HCVCDPGFSGELCEQESECRGDPVRDFHQVQRGYAICQTTRPLSWVECRGACPGQGCCQG
LRLKRRKFTFECSDGTSFAEEVEKPTKCGCAVCA
NT seq
4605 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacgccccggagggggccctcggcagggctcgtccggcccgagctctggctg
ctgctgtgggcagctgcgtggcgcctgggtgccaccgcgtgccccgccctctgcacctgc
accggcaccacggtggactgccacggcacggggctgcaggccatcccaaagaacatccca
cggaacacggagcgcctggaactcaatgggaacaacatcactcggatccacaaaaacgac
tttgcggggctcaagcagctgcgggtgctgcagctgatggagaaccagattggagtggtg
gagcggggggcttttgacgacatgaaggagctggagcggctacgactgaaccggaaccag
ctgcacctgttaccggaactgctgttccagaataaccaggctctgtcaaggctggacctg
agtgagaacacaatccaggccatccccagaaaagcttttcgtggagctacagacctcaaa
aatttacagctggacaagaaccagatcagctgcatcgaggaaggggccttccgggctctg
cgggggctggaggtgctgaccctgaacaacaacaacatcagcaccatccccgtgtccagc
ttcaaccacatgcccaagctgcggaccttccgcctgcactccaaccgcctgttctgcgac
tgccacctggcctggctctcacagtggctgaggcagcggccaaccatcgggctcttcacc
cagtgctcgggccccgctagcctgcgtggcctcaatgtggctgaggtccagaagagtgag
ttcagctgctcaggccaaggggaggcaggccgagtgccttcctgcaccctctcctctggc
tcctgcccggccatgtgcacctgcagcaacggcattgtggattgtcgcggcaaaggcctc
accgccatcccggccaacctgcctgagaccatgacggagatccgcctggagctcaatggg
atcaagtccatccccccaggagccttctctccctacagaaagctgcggaggatagacctg
agcaacaaccagattgcagagattgcgcctgatgccttccagggcctccgctccctgaac
tcgctggtcctgtatgggaacaagatcacagacctcccccggggtgtgtttggaggcctg
tacaccctacagctcctgctcttgaatgccaacaagatcaactgcgtccggcccgatgct
ttccaggacctgcagaacctctcacttctctccctgtatgacaacaagatccagagcctc
gccaagggcaccttcacctccctgcgggccatccagaccctgcatctggcacagaaccct
ttcatctgtgactgtaacctcaagtggctggcggacttcctgcgcaccaaccccatcgag
acgagcggggcccgctgcgccagcccccgacgcctcgccaacaagcgcatcgggcagatc
aagagcaagaagttccgctgctcagccaaagagcagtacttcattccaggcacggaggac
taccagctgaacagcgagtgcagcagcgacgccgtctgtccgcacaagtgccgctgtgag
gccagcctggccgagtgctccagcctgaagctcaccaagatccccgagcgcatcccccag
tccacggctgagctacgattaaacaacaatgagatttccatcctggaggccactggaata
tttaaaaaactcactcatctgaagaagatcaatctgagcaacaacaaggtgtcggaaatc
gaagatggggccttcgagggtgcagcctctgtgagcgagctgcacctgactgccaaccag
ctggagtccattcggagcggcatgttccgaggcctggatggcttgaggaccctgatgctg
aggaacaaccgcattagctgcatccacaacgacagcttcacgggcctgcgcaatgtccgc
ctgctctcgctctacgacaaccagatcgccaccatctcccccggggcctttgacaccctc
caggccctctccacgctaaaccttctggccaatcctttcaactgcaactgccaactggcc
tggctgggcgactggctgcggcggaggaagatcgtgaccggcaacccgcggtgccagaac
ccagacttcctgcggcagatccccctgcaggacgtggccttccccgacttcaggtgtgag
gaaggccaggaggaggggggctgcctgccccgcccccagtgcccccaggaatgtgcctgc
ctggacaccgtggtccgatgcagcaacaaacatctccaggtcctgcccaagggcatcccc
aagaatgtcaccgaactctacttggacgggaaccagttcacactggttccaggacagctg
tccaccttcaagtacctgcagcttgtggacttgagcaacaacaagatcagttccctgagc
aattcctccttcaccaacatgagccagctgaccactctcatcctcagctacaatgccctc
cagtgcatccctccgctggccttccaggggctgcgctccctgcgcctgctgtccctgcac
ggcaatgacatctccagcctccgagagggcatcttcacagacgcgacctccctgtctcac
ctggccatcggtgccaaccctctgtactgtgactgccacctccgctggctgtctggctgg
gtgaagacaggctacaaggaaccaggcattgcccgctgcgcgggacccccagacatggag
ggcaagctgctcctcaccacacctgccaagaagtttgaatgccaaggtccccccaccctg
gctgtccaggccaaatgtgatccctgcttgtccagcccgtgccagaaccagggcacctgc
aataatgacccccttgaggtgtacaggtgtgcctgctccagtggctataagggccgaaac
tgcgaggtgtccctggacagctgttccagcagcccctgtggcaacggcgggacctgccgc
ccacaggagggcgaggatactgggttcatgtgttcctgtcccaccggctttgaaggacca
acctgtgaggtgaatacggatgactgcgtggcgcacacctgtgccaacgggggcatctgt
gtggacggcgtgggcaactacagctgccggtgccccctgcagtacacgggaagggcctgt
gagcagctggtggacttctgctccccggatctgaacccgtgtcagcacgaggctcagtgt
gtgggtactccagatgggcccaggtgtgagtgtgcaccaggttatgcaggtgacaactgc
agtgagaaccaggatgactgcagggaccaccgctgccagcatggggcccagtgtgtggac
gaagtcaacagctactcttgcctctgtgctgagggctacagcgggcagttctgtgaggcc
cctccccgccctcccaccccccgaagcccctgcgaggggactgagtgccagaacggggcc
aactgcgtggaccagggcggcgggcccgtgtgccagtgcctcccaggcttcggcggcccc
gagtgcgagaagctgctcagtgtcaactttgtggaccgggacacctacttgcagttcacg
gacctgcagaactggccccgggccaacatcacgctgcaggtctccacagcagaggataac
gggatcttgctgtacaatggggacaatgaccacatcgcagtggagctgtaccagggtcac
gtgcgcgtcagctacgacccgggcagctaccccagctctgccatctacagtgccgagacg
atcaatgatgggcagttccatactgttgagctggttacctttgaccagatggtgaatctc
tccatcgatggaggcagtcccatgaccatggacaattttggcaaacactacacactaaac
agtgaggctcccctctacgtgggagggatgccagtggatgtgaactcagccgccttccgc
ctgtggcagatcctcaacggcaccagcttccatggttgcatccgaaacctgtacattaac
aatgagctgcaggacttcaccaagacgcggatgaagccaggcgtggtgccaggctgtgag
ccctgccggaagctctactgcctccatggcatctgccagcccaatgccaccccggggcct
gtgtgccactgcgaggccggctgggggggcctacactgtgaccaaccagcagacggcccc
tgccatggccacaagtgtgtccacgggaagtgtgtgcccctcgacgctctttcctacagc
tgccagtgccaggatgggtactcgggggctctgtgcaaccaggctggggcacctgcggac
ccctgtgggggcctgcagtgcctgcatggccactgccaggccttggccaccaagggggca
cactgtgtgtgtgaccctggcttttcgggcgagctgtgtgagcaagagtccgagtgccgg
ggggaccccgtccgggactttcaccaggtccagaggggctatgccatctgccagaccacg
cgcccgctgtcatgggtggagtgccggggcgcatgcccaggtcagggctgctgccagggc
ctgcggttgaagcggaggaagttcacctttgagtgcagcgacgggacctcttttgctgag
gaggtggagaagcccaccaagtgtggctgtgccgtctgcgcgtag
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integrated database retrieval system
