Amycolatopsis mongoliensis: QRX60_02325
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Entry
QRX60_02325 CDS
T09938
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amog
Amycolatopsis mongoliensis
Pathway
amog03030
DNA replication
amog03410
Base excision repair
amog03420
Nucleotide excision repair
amog03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QRX60_02325 (ligA)
03410 Base excision repair
QRX60_02325 (ligA)
03420 Nucleotide excision repair
QRX60_02325 (ligA)
03430 Mismatch repair
QRX60_02325 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amog03032
]
QRX60_02325 (ligA)
03400 DNA repair and recombination proteins [BR:
amog03400
]
QRX60_02325 (ligA)
Enzymes [BR:
amog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QRX60_02325 (ligA)
DNA replication proteins [BR:
amog03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QRX60_02325 (ligA)
DNA repair and recombination proteins [BR:
amog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QRX60_02325 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QRX60_02325 (ligA)
MMR (mismatch excision repair)
DNA ligase
QRX60_02325 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QRX60_02325 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WIY02732
UniProt:
A0A9Y2NFA7
LinkDB
All DBs
Position
complement(491139..493319)
Genome browser
AA seq
726 aa
AA seq
DB search
MSSTELSQDQVAAVDAPVAAEDVADVPAEVRERHAALAEDLRNHQFRYYVLDSPIISDGQ
FDELLGELQQIEDAHPALVTPDSPSQRVGGTFSNEFTAYDHLERMLSLDNVFDQDEFVAW
VERVEKEVGRTEFLAELKIDGLAINLLYENGHLTRALTRGDGRTGEDVTLNVRTLDQVPE
TLTGTGKFPVPALVEVRGEVYFRVEDFLKLNAMIVEAGKPPFANPRNTAAGSLRQKDPKI
TRERKLRLICHGLGKREGFEPARQSEAYDALAAWGLPVSPHSKVLTTAEELAAHITYWGE
HRHDAEHEIDGVVIKVDQVALQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVGVGRTG
RVTPFAVTEPVVVAGSTVARATLHNQEEVKRKGVLIGDRIVIRKAGDVIPEVLGPVVDAR
TGDEREFVMPTHCPECGTELAYQKEGDKDIRCPNTRFCPAQLRERLFHLAGRGAFDIEVL
GYEAAVALLDARVVADEGDVFDLNEDSLAEVELFRTKAGELSANARKLLANLDVAKDRPL
WKVLVALSIRHVGPTAAQALAREFGSIERIEQATEEELADVDGVGPTIAHATQEWFEVGW
HREIVEKWRRAGVRMEEERDESVPRNLEGLSIVVTGSLDGFSRDEAKEVIMARGGKAAGS
VSKKTSFVVVGDSPGSKYDKAVQLKVPVLDEAGFRVLLERGPEAAQEVALPAGDETAEDE
TGGTDG
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcaccgaactctctcaggaccaagtcgcggcggtcgacgccccggtggccgcc
gaggacgtcgccgacgtcccggccgaggtccgcgaacggcacgccgccctcgcggaagac
ctgcgtaaccaccagttccgctactacgtcctggactcgccgatcatctccgacgggcag
ttcgacgagctgctcggcgaactgcagcagatcgaggacgcgcacccggcgctggtcacg
ccggattcgccgtcccagcgcgtcggcggcacgttctcgaacgagttcaccgcgtacgac
cacctcgagcgcatgctcagcctggacaacgtgttcgaccaggacgagttcgtggcgtgg
gtggagcgcgtcgagaaggaggtcggtcgcaccgagttcctcgccgagctgaagatcgac
ggcctcgcgatcaacctcttgtacgaaaacggccacctcacccgggcgctcacccggggt
gacggccgcaccggcgaggacgtcacgttgaacgtccgcacgctcgaccaggtgccggag
acgctgaccggcaccggcaagttcccggtgcccgccctggtcgaggtgcgcggcgaggtc
tatttccgggtcgaggacttcctcaagctgaacgcgatgatcgtcgaagcgggcaagccg
ccgttcgcgaacccgcgcaacaccgcggcgggctcgctgcggcagaaggaccccaagatc
acccgggaacgcaagctgcggttgatctgccacgggctcggcaagcgcgagggcttcgaa
cccgcgcggcagtcggaggcgtacgacgcgctggccgcgtgggggctgccggtgtcaccg
cacagcaaggttttgaccacggcggaggagctcgccgcgcacatcacctactggggtgag
caccggcacgacgccgagcacgagatcgacggcgtcgtcatcaaagtcgaccaagtggcg
ctgcagcgccggctgggtacgacgtcgcgcgcgccgcggtgggcgatcgcctacaagtac
ccgccggaagaggcgatcaccacgctgctggacatccaggtcggcgtcgggcggaccggg
cgggtcacgccgttcgcggtcaccgagccggtcgtggtcgcggggtcgaccgtcgcgcgc
gccacccttcacaaccaggaggaggtcaagcgcaagggtgtgctcatcggtgaccggatc
gtcatccggaaggccggcgacgtcatcccggaggtcctcgggccggtggtcgacgcgcgg
actggtgacgaacgcgagttcgtcatgcccacccactgcccggaatgcggcaccgagctc
gcctaccagaaggaaggcgacaaggacatccgctgcccgaacacgcggttctgtcccgcg
cagttgcgggagcggctcttccacctggccgggcgcggcgccttcgacatcgaggtcctc
gggtacgaggccgcggtcgcgctgctcgacgcgcgggtggtcgccgacgagggcgacgtc
ttcgacctgaacgaggacagcctcgccgaggtcgagctgttccgtacgaaggccggcgag
ttgtcggcgaacgcgcgaaagctgctcgccaaccttgacgtggcgaaggaccggccgctg
tggaaggtgctggtcgctttgtcgatccggcacgtggggccgaccgcggcgcaggcgctg
gcccgcgagttcggctcgatcgagcgcatcgagcaggcgaccgaggaggagctggcggac
gtcgacggcgtcggcccgaccatcgcgcacgcgactcaggagtggttcgaggtcggctgg
caccgcgagatcgtcgaaaagtggcgacgcgccggcgtgcggatggaggaggagcgcgac
gagtccgtcccgcgcaacctcgaaggcttgtcgatcgtagtgacgggctcgctcgacggc
ttctcccgcgacgaggccaaggaggtcatcatggctcgcggcggcaaggccgccggatcg
gtctcgaagaagacctccttcgtcgtcgtcggggactcgcctggttcgaaatacgacaag
gccgtgcagctcaaggtgccggtgctcgacgaagccggcttccgcgtcctgctggagcgg
gggcccgaggcggcgcaagaggtggcgctgccggccggcgacgagaccgccgaagacgag
actggggggacggatgggtga
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