Amycolatopsis mongoliensis: QRX60_33790
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Entry
QRX60_33790 CDS
T09938
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amog
Amycolatopsis mongoliensis
Pathway
amog03030
DNA replication
amog03410
Base excision repair
amog03420
Nucleotide excision repair
amog03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QRX60_33790 (ligA)
03410 Base excision repair
QRX60_33790 (ligA)
03420 Nucleotide excision repair
QRX60_33790 (ligA)
03430 Mismatch repair
QRX60_33790 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amog03032
]
QRX60_33790 (ligA)
03400 DNA repair and recombination proteins [BR:
amog03400
]
QRX60_33790 (ligA)
Enzymes [BR:
amog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QRX60_33790 (ligA)
DNA replication proteins [BR:
amog03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QRX60_33790 (ligA)
DNA repair and recombination proteins [BR:
amog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QRX60_33790 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QRX60_33790 (ligA)
MMR (mismatch excision repair)
DNA ligase
QRX60_33790 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QRX60_33790 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH_2
BRCT
DNA_ligase_ZBD
HHH
IclR_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WIX99005
UniProt:
A0A9Y2JI18
LinkDB
All DBs
Position
complement(7026965..7028956)
Genome browser
AA seq
663 aa
AA seq
DB search
MEARERIQELADRIVVLRDAYYRGSPLVADAEYDAVEDELRGLIAENPDLTPDPNPLDQV
GAPAILHAPIRHSRPMLSLEKATKPEQVEAFFDRFPGQPVVVMPKLDGLSLALVYEEGRL
KRAVTRGDGTTGDDVTVLVRALTDGIPDRVDAPGRVEVRGEAVMLRSTFAAYNVAHPDKP
LINPRNAAAGTLRAKDPATVAERRLWFFAFDLDTDPDSAETDLGSALQTLGFTAADMRRC
ADAAAAQAVIGEIEQQRNDLDYDLDGAVLRLADRAAYAAAGTRSSSPRGALAFKFAAEEK
TTLLADVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQEVIKARGIKIGDTVLVRRA
GDVIPFVAGVLDASKRTGEEREIVPPSACPSCGQPLTEQGNSRELFCTNVACPAQTVRRL
VHWASRAAADIDAIGGVWIERLAESGDLEHPSDFYRLTKERLLEFDRIGEVSATRMIESI
DGSRSVGLRRALIGLAIPMASEGTAARLCRAGFGSLEDVAAAGVDGLVAVEDIGPKVAAS
LIEHLTRLRPELERLRERGVSLDVREEDLPPVIAAGAPLAGKTVVVTGSISDPRSGEKVA
RPTFQRLCEKAGATIASSVSASTDLLITGADVGAAKLTKAEKHGVTVADQSEIWPQLIEA
GII
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtggaagctcgggaacgcatacaggaactggccgaccgcatcgtggtcctccgcgacgcg
tactaccggggttcgccgttggtggcggacgccgagtacgacgcggtcgaggacgagctg
cggggactcatcgcggagaacccggacctgaccccggatccgaaccccctcgaccaggtc
ggcgccccggcgatcctgcacgctccgatccggcactcgcggcccatgctctccctggaa
aaggccacgaaacccgagcaggtcgaagccttcttcgaccgcttccccggccagccggtc
gtcgtcatgcccaagctggacggcctgtcactggccctcgtctacgaggagggccggctc
aagagagccgtcacccgcggggacgggacgaccggtgacgacgtcaccgtgctggtgcgg
gcgctcaccgacggcatcccggaccgcgtcgacgccccgggccgcgtcgaggtgcggggc
gaggcggtcatgctgcggtccaccttcgccgcctacaacgtcgcgcacccggacaagccg
ctgatcaacccccgcaacgccgccgccggcacgctgcgcgccaaggacccggccaccgtc
gccgaacggcggctgtggttcttcgccttcgacctcgacaccgaccccgacagcgccgag
accgacctgggcagtgcactgcagacgctcggcttcaccgcggccgacatgcgccgctgt
gccgacgcggccgccgcccaggccgtcatcggcgagatcgaacagcagcgcaacgacctc
gactacgacctcgacggcgccgtcctgcggctcgccgaccgggccgcctacgccgccgcc
ggcacccggtcgagctcaccgcgcggtgcgctcgccttcaagttcgccgccgaggagaag
accaccctcctggccgatgtggtctgggacgtcggcaagacgggcaagatcgccccggtc
gcctggctggaacccgtgttcgtcggcggcaccaccgtcacccgcgccacgctcgccaac
caggaggtgatcaaggcccggggcatcaagatcggcgacaccgtcctggtgcgccgcgcc
ggggacgtcatcccgttcgtggccggcgtgctcgacgcgtcgaagcgcaccggcgaggag
cgggagatcgttcccccctccgcctgcccgtcgtgcgggcagccgctgaccgagcagggc
aacagccgggagctgttctgcaccaacgtcgcctgtccggcccagacggtgcggcggctg
gtccactgggcctcgcgggccgcagcggacatcgacgccatcggcggcgtgtggatcgaa
cggctggccgagtccggcgacctcgagcacccgtcggacttctaccgcctgaccaaggag
cggctgctggagttcgaccgcatcggcgaggtctcggcgacgcgcatgatcgagtcgatc
gacgggagccggtcggtcgggctgcgccgggcgctgatcgggctcgccatcccgatggcg
tccgaaggcaccgccgcccgcctgtgccgggcggggttcggttccctggaagacgtcgcc
gcggcgggcgtcgacgggctcgtcgccgtcgaggacatcgggccgaaggtcgccgcgtcg
ctgatcgagcacctcacgcggctgcgacccgaactcgaacggctgcgggagcggggcgtg
tcgctggacgtccgcgaggaggacctcccgccggtcatcgcggccggtgctcctctggcc
ggcaagacggtcgtcgtcaccggctccatcagcgacccgcgctcgggcgagaaggtcgcc
cggccgaccttccagcggctgtgcgagaaggccggcgcgaccatcgcgtcgtcggtctcg
gcgagcacggacctgctcatcaccggcgccgacgtcggcgccgccaagctcacgaaggcg
gagaagcacggcgtgaccgtcgccgaccagagcgaaatctggccgcagctcatcgaagcc
ggaatcatctga
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integrated database retrieval system
