Anaplasma marginale Gypsy Plains: U128_00550
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Entry
U128_00550 CDS
T02900
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amp
Anaplasma marginale Gypsy Plains
Pathway
amp03030
DNA replication
amp03410
Base excision repair
amp03420
Nucleotide excision repair
amp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U128_00550
03410 Base excision repair
U128_00550
03420 Nucleotide excision repair
U128_00550
03430 Mismatch repair
U128_00550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amp03032
]
U128_00550
03400 DNA repair and recombination proteins [BR:
amp03400
]
U128_00550
Enzymes [BR:
amp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
U128_00550
DNA replication proteins [BR:
amp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U128_00550
DNA repair and recombination proteins [BR:
amp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
U128_00550
NER (nucleotide excision repair)
GGR (global genome repair) factors
U128_00550
MMR (mismatch excision repair)
DNA ligase
U128_00550
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
U128_00550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
Nlig-Ia
PTCB-BRCT
Zn_ribbon_NUD
RNA_lig_T4_1
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AGZ78572
LinkDB
All DBs
Position
complement(130453..132474)
Genome browser
AA seq
673 aa
AA seq
DB search
MLEQARRRLAGLNAKLRHHDVLYHGLDAPEVTDHQYDLLVQEKKRLLDEFPDIRQYDDYA
DVVGTPKIDSRFPKVQHLEPMLSLENAFTVQDVEKFITRVRRFLELQPDDILELSCELKM
DGMSFSALYHGGKLTRVATRGNGHFGEDITTNAMVLRGLPHQLDSAPEVLEVRGEIYMHH
EDFEKLRGSCNFANPRNAAAGSIRQLNQKIVEERNLSYVAYSAVNSTFATQQEILKQLDE
WGFHTNKQVLFTDKIEEAIAFYNSVYTTRSALGYDIDGVVYKVNSINFQKLLGATGKSPR
WAIAHKFPSTEARTKLLDITVQVGRTGVVTPIAELEPINIGGVMVSRASLHNLNEIERKD
VRIGDLVIVKRAGEVIPQVVDVDKTLRSSGTQKFVFPSHCPSCGSKLHREPGEVALRCVA
ELSCKAQALERVKHFVSRDGLNIMGLGAKQIEFFCNHGLIGSIADIFSLEEKLHGINLDT
EHGWGEKSVANLIAAIRNSATVRLSNFIFALGIRFIGVGAAKLIAEHYRSYKNWHQAMLA
LTETHDTIQIRGLGEKSISSLKAFFSVQGNLEVLESLSAKLNILDEASPAQRGSSAISGK
TVVFTGTLESMSRTEAKLQAESLGAKVANSVSANTWLLVAGSNPGSKHEKALSLNVRVID
EQTWVKMVEDARS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgttggagcaggctaggcgcaggttggctggtctgaatgcgaagctccgccaccacgat
gtgctataccacgggcttgatgcaccagaggtgacggaccaccaatatgaccttttagta
caagagaaaaaaaggctcttggacgagttcccggacattcgtcagtatgatgactacgca
gacgtcgtgggcacgcctaaaattgactccaggttccccaaggtgcagcatttggagccc
atgctctctctggaaaacgcttttaccgtacaggatgtggaaaaatttatcaccagggtg
aggcggttccttgagctgcagccagatgacattttagagctttcctgcgagttaaaaatg
gatggcatgtcattctctgcgctataccatggtggaaagcttaccagagtggcaacgcgc
ggcaatgggcacttcggcgaggatatcaccaccaacgcgatggtcctgcgcgggctgcca
catcagctagattcggccccagaagtgcttgaagtgcgcggtgaaatatacatgcaccat
gaagactttgaaaagctacgagggtcctgcaattttgcaaatccacgtaacgcagccgcg
gggtcaatacgccagctcaaccagaagattgttgaggagcgcaaccttagttacgtggct
tattccgcggtaaacagcacatttgcaacccagcaggaaatactaaagcagctggatgaa
tgggggtttcatacaaacaagcaagtgcttttcacggacaaaatagaagaggcgattgca
ttttataactcggtctacacaaccagaagtgcgcttggttatgacatagacggagtcgta
tacaaggtaaacagcatcaatttccagaagcttctcggtgcaaccgggaaatcaccccgt
tgggcaattgcgcacaaattcccctctactgaggctcgcacaaaacttcttgatatcacc
gtacaagtaggcagaaccggcgttgtaactccaatagcggagctggagccaatcaacata
ggaggcgttatggtttccagggcaagtctgcacaacctcaatgaaatcgaacgcaaagat
gtgcgcataggagacttggtcatagtaaagcgggcaggagaagttataccgcaggtggtt
gacgtagataaaaccctccgcagtagcgggacgcagaaatttgtctttccctcgcactgc
ccgtcatgcggtagcaagctgcaccgcgagcccggtgaagtcgctctgcggtgtgtggca
gagttgtcatgcaaagcacaggctctagagcgcgttaagcacttcgtatccagagatggc
ttaaacattatgggcctgggggcaaagcagatagagttcttctgcaaccatgggctgatt
ggcagcatagccgatattttttccctggaggaaaagctacatggcatcaacctggataca
gaacatgggtggggggaaaagtcagtcgcaaatctcatcgccgcaatacgcaacagcgca
acagtcaggctcagcaacttcatatttgccctgggaatacggtttataggcgtgggcgcg
gcaaaacttattgctgaacattacagatcttataaaaactggcaccaagcgatgttagcg
ctcaccgaaacacatgatactatacaaattcgcggcttgggagaaaaaagcataagttct
ttgaaggcatttttctctgtgcaggggaatctggaagtattagagtcgctgagcgcaaag
ctcaacattttggacgaggcatctccggcgcaacgcggcagctccgctatttccggcaaa
accgtggtgtttaccggcactttggagagcatgtcaagaacggaagcgaagctgcaggcg
gaaagcctaggggctaaagtggcgaattccgtatccgcaaacacctggttactggttgca
ggtagcaatccaggaagtaagcacgaaaaagcactaagcctgaacgtcagggtaatagac
gagcagacttgggtgaagatggtagaggatgcacgctcctga
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