Amycolatopsis methanolica: AMETH_1485
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Entry
AMETH_1485 CDS
T03230
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amq
Amycolatopsis methanolica
Pathway
amq03030
DNA replication
amq03410
Base excision repair
amq03420
Nucleotide excision repair
amq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMETH_1485 (ligA)
03410 Base excision repair
AMETH_1485 (ligA)
03420 Nucleotide excision repair
AMETH_1485 (ligA)
03430 Mismatch repair
AMETH_1485 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amq03032
]
AMETH_1485 (ligA)
03400 DNA repair and recombination proteins [BR:
amq03400
]
AMETH_1485 (ligA)
Enzymes [BR:
amq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMETH_1485 (ligA)
DNA replication proteins [BR:
amq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMETH_1485 (ligA)
DNA repair and recombination proteins [BR:
amq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMETH_1485 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMETH_1485 (ligA)
MMR (mismatch excision repair)
DNA ligase
AMETH_1485 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMETH_1485 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_Nudix
Motif
Other DBs
NCBI-ProteinID:
AIJ21577
UniProt:
A0A076MUQ2
LinkDB
All DBs
Position
1511374..1513494
Genome browser
AA seq
706 aa
AA seq
DB search
MSETPAAQDVTEVPAEVRERHGALAEEVRGHQFRYYVLDSPVISDGEFDALLKELERLES
EYPGLATPDSPTQNVGGTFSTDFVAVDHLERMMSLDNVFDEEELRAWVDRVEREVGGSTQ
YLCELKIDGLAINLLYEKGRLVRGLTRGDGRTGEDVTLNVRTLEQVPETLTGTDEYPVPD
LVEVRGEVFFRVEDFAELNARLVEAGKPPFANPRNTAAGSLRQKDPKVTRSRKLRLICHG
LGKREGFEPARQSEAYEALAAWGLPVSSHTKVVDKASELLDHIRYWGEHRHDAEHEIDGI
VVKVDQVSLQRRLGSTSRAPRWAIAYKYPPEEATTRLLDIQVNVGRTGRVTPFAVMEPVK
VAGSTVAMATLHNAQEVKRKGVLIGDRVVIRKAGDVIPEVLGPVVDVRTGDEREFIMPTF
CPECGTKLAHQKEGDVDIRCPNARSCPAQLRERLFHLAGRGAFDIEMLGYEAATALLESG
VVVDEGDIFDLDEEKLGRVELFRTKAGELSANGRKLLANLDSAKDRPLWRVLVALSIRHV
GPTAAQALAREFGSLEAIENADEAAMADVDGVGPTIAGALREWFAVDWHREVVEKWRRAG
VRMAEERDESVPRTLEGLSIVVTGSLNTFSRDEAKEAIMSRGGKAAGSVSKKTAFVVVGD
APGSKYDKAVQLKVPILDEGGFQVLLDRGPEAAAEVALPTEEPAGE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgagactccagccgcacaggacgtcaccgaggtccccgccgaggtccgcgagcgc
cacggcgcgctcgcggaagaggtgcgcgggcaccagttccggtactacgtgctggactcg
ccggtcatcagtgacggcgagttcgacgcgctgctcaaggagctggagcggctggagtcg
gagtacccgggcctggcgacgccggattcgccgacccagaacgtcggcggcactttctcc
accgacttcgtcgcggtcgaccacctcgagcgcatgatgagcctggacaacgtcttcgac
gaggaggagttgcgggcctgggtggaccgggtggagcgcgaggtcggcgggtccacgcag
tacctgtgcgagctcaagatcgacgggctggccatcaacctgctgtacgagaaggggcgg
ctggtccgcgggctcacccgcggcgacgggcggacgggtgaggacgtcacgctcaacgtc
cgcaccctcgagcaggtgccggagacgctgaccggcacggacgagtacccggtgcccgac
ctggtcgaggtgcgcggcgaggtgttcttccgggtcgaggacttcgcggagctcaacgcc
cggctggtcgaggcgggcaagccgccgttcgcgaacccgcgcaacaccgcggccgggtcg
ttgcggcagaaggacccgaaggtcacgcgcagccggaagctgcggctgatctgccacggc
ctcggcaagcgcgagggtttcgagccggcgcggcagtcggaggcctacgaggcgctggcg
gcgtgggggctgccggtgtccagccacacgaaggtcgtcgacaaggcgtccgagctgctg
gaccacatccggtactggggcgagcaccggcacgacgccgagcacgagatcgacggcatc
gtggtgaaggtcgaccaggtgtcgctgcagcggcggctgggcagcacgtcccgcgcgccg
cggtgggccatcgcctacaagtacccgccggaggaggcgaccacccggctgctcgacatc
caggtcaacgtcggccgcaccgggcgggtcacgccgttcgcggtgatggagccggtgaag
gtggccgggtcgacggtggcgatggcgacgctgcacaacgcgcaggaggtcaagcgcaag
ggcgtgctgatcggcgaccgcgtggtgatccgcaaggcgggcgacgtgatccccgaggtg
ctcggcccggtggtcgacgtgcgcaccggggacgagcgcgagttcatcatgcccacgttc
tgcccggagtgcggcacgaagctggcgcaccagaaggagggcgacgtcgacatccggtgc
cccaacgcccggtcgtgtcccgcgcagctgcgggagcggctgttccacctggccgggcgc
ggcgcgttcgacatcgagatgctgggctacgaggcggcgacggcgctgctggagtccggt
gtggtcgtcgacgagggcgacatcttcgacctggacgaggagaagctgggccgggtcgag
ctgttccgcaccaaggcgggggagctgtcggcgaacgggcgcaagctgctggccaacctg
gacagcgcgaaggaccgtccactgtggcgggtgctggtggcgttgtcgatccggcacgtc
ggccccaccgctgcccaggcgctggcgcgcgagttcggctcgctggaggcgatcgagaac
gccgacgaggccgcgatggccgatgtggacggtgtcgggccgacgatcgccggggcgttg
cgggagtggttcgccgtcgactggcaccgcgaggtggtggagaagtggcgccgagcgggg
gtccggatggcggaggagcgcgacgagtcggtgccgcgcacgctggagggcctgtccatc
gtggtgaccggttcgctgaacaccttctcgcgcgacgaggccaaggaggcgatcatgtcg
cgcggtggcaaggccgcgggctcggtgtcgaagaagacggcgttcgtcgtggtcggcgac
gcgcccgggtccaagtacgacaaggcggtgcagctgaaggtcccgatcctcgacgagggc
gggttccaggtgctgctggaccgcggcccggaggcagccgccgaggtggcgttgccgacg
gaggagccggccggtgagtga
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