Achromobacter mucicolens: PE062_02750
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Entry
PE062_02750 CDS
T08808
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amui
Achromobacter mucicolens
Pathway
amui03030
DNA replication
amui03410
Base excision repair
amui03420
Nucleotide excision repair
amui03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PE062_02750 (ligA)
03410 Base excision repair
PE062_02750 (ligA)
03420 Nucleotide excision repair
PE062_02750 (ligA)
03430 Mismatch repair
PE062_02750 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amui03032
]
PE062_02750 (ligA)
03400 DNA repair and recombination proteins [BR:
amui03400
]
PE062_02750 (ligA)
Enzymes [BR:
amui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PE062_02750 (ligA)
DNA replication proteins [BR:
amui03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PE062_02750 (ligA)
DNA repair and recombination proteins [BR:
amui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PE062_02750 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PE062_02750 (ligA)
MMR (mismatch excision repair)
DNA ligase
PE062_02750 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PE062_02750 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WBX89586
LinkDB
All DBs
Position
599117..601216
Genome browser
AA seq
699 aa
AA seq
DB search
MASRSGENPAQAAARLRAEIEQHNVRYYVYDEPSVSDAEYDGLMRELQALEAEHPELVTP
ESPTQRVGAAPVSAFGSVRHVVPMLSLNNAFSEEEVAAFDRRVTETLRGAGMLGPAQQPD
YFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGAAPKVLEV
RGEVLMNRADFEKLNAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEV
QGLPGSQSGLFDEASAGAAQASQLPEKSHGAMLAWLSSLGLPVNVVHNHRATGAQGLMDF
YAKVGALRATLPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLVDIEV
QVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVLG
PVLEKRPDDAREFVMPTQCPVCESAIERLEGETIARCTGGLFCGAQRKQTLWHAASRKAL
DIEGLGEKLVDQLVDSGRVKTLADLYSLRPLELVGLDRMGQKSADNLVAAIEKARSPNLS
RLLFALGIRHVGETTARDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRHFFAEQHN
RDVIEQLKSQGVNPVAEAAPQDTTLAGKTFVLTGTLPNWTREEASMHIQAAGGKVSGSVS
KKTAYLVAGEDSGSKLTKAQELGVPVLDEDGLKALLGVS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcaggtccggcgagaacccggcgcaagccgcggcgcgcctgcgtgccgaaatc
gaacagcacaacgtccgctactacgtctacgacgagccttccgtctcggacgccgagtac
gacgggctgatgcgcgaattgcaggccctggaggccgagcatcccgaactggtgacgccg
gaatcgcccacgcagcgcgtgggcgcggcgccagtctccgcgtttggcagcgtgcgccac
gtggtgccgatgctgtcgctgaacaatgcgttttccgaggaagaggtggccgccttcgac
cgccgcgtcaccgagacgctacgcggcgccggcatgctgggacccgcgcagcagccggac
tacttctgtgaactgaagctcgacggcctggcgatcagcctgcgctacgaggacggccgc
ctggtgcaggccgccacccgcggcgacggccagaccggcgaggacgtcacgtccaacatc
cgcacgatcaaggcgattcccctgcagttgaagggcgcggccccaaaggtgctggaggtg
cgcggtgaggtgctgatgaaccgcgccgacttcgaaaagctgaacgccgcgcaggccaag
cgcgacgaaaaggtcttcgtcaacccgcgcaatgcggcggcgggcagcctgcgccagctc
gatccgcgcatcacggccaagcggccgctgcgtttctttgcctacggctggggcgaggtc
cagggcttgcccggctcgcagagcggcctgttcgacgaagcctccgcgggcgcggcgcag
gcgtcgcaactgcccgagaaatctcacggcgccatgctggcgtggctgtcctcgctggga
ctgccggtcaatgtggtgcacaaccatcgcgcaaccggcgcgcaaggcctgatggacttc
tacgccaaggtgggcgccttgcgcgccaccctgccgtacgacatcgacggcgttgtctac
aaggttgattcgctgcccgcgcagaaggtgctgggcttcgtggcgcgcgcgccgcgcttt
gcgctggcgcacaagttcgcggccgaagaagccaccacgacgctggtggacatcgaagtg
caggtaggccgcacgggcgccatcaccccggtcgcgcggctcaagcccgtgttcgtgggc
ggcgtcaccgtcaccaacgccacgctgcacaacgaagacgagatccgccgcaaggacgtg
cgcattggcgacaccgtcatcgtgcggcgcgcgggcgacgtgattcccgaagtgctgggc
ccggtgctggaaaagcggcccgacgacgcgcgggaattcgtcatgcccacgcaatgcccg
gtctgcgaatcggccatcgagcgcctggaaggcgagaccatcgcgcgctgcaccgggggc
cttttctgtggcgcccagcgcaagcagacactgtggcacgcggccagccgcaaggcgttg
gacatcgaaggcctgggcgaaaagctggtggaccagttggtggacagcggccgcgtcaag
acactggcagacctgtacagcctgcgtccgctggaactcgtgggcctggaccgcatgggc
cagaagtccgcggacaacctggtggccgccatcgaaaaggcgcgctcgcccaacctgtcc
cggctgctcttcgcgctgggtatccgccacgtgggcgaaaccacggcgcgggacgtcgcg
cggcatttcggcagcatcgacgccatcatggacgcggacgaagacgcgttgtcttcggtg
ccggacgtggggcccgtggtggccgcgtcgatccggcatttctttgccgagcagcacaac
cgcgacgtcatcgagcaactcaagtcgcagggcgtgaacccggtggccgaagccgcgccg
caagacaccacgctggccggcaagaccttcgtgctgaccggcacgctgcccaactggacg
cgcgaagaggcctcgatgcacatccaggccgcgggcggcaaggtcagcggctcggtgtcc
aagaagacggcctatctggtcgcgggcgaagattccggcagcaagctgaccaaggcccag
gagctgggcgtgccggtgctggatgaagatggactgaaggcgctgctgggcgtttcctag
DBGET
integrated database retrieval system
