KEGG   Amycolatopsis sp. BJA-103: BKN51_24785
Entry
BKN51_24785       CDS       T05296                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
amyb  Amycolatopsis sp. BJA-103
Pathway
amyb03030  DNA replication
amyb03410  Base excision repair
amyb03420  Nucleotide excision repair
amyb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:amyb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BKN51_24785
   03410 Base excision repair
    BKN51_24785
   03420 Nucleotide excision repair
    BKN51_24785
   03430 Mismatch repair
    BKN51_24785
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amyb03032]
    BKN51_24785
   03400 DNA repair and recombination proteins [BR:amyb03400]
    BKN51_24785
Enzymes [BR:amyb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BKN51_24785
DNA replication proteins [BR:amyb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BKN51_24785
DNA repair and recombination proteins [BR:amyb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BKN51_24785
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BKN51_24785
   MMR (mismatch excision repair)
    DNA ligase
     BKN51_24785
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BKN51_24785
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT Nlig-Ia HHH BRCT_2
Other DBs
NCBI-ProteinID: AUI61081
LinkDB
Position
complement(5781857..5784004)
AA seq 715 aa
MSSELPENPEPVQDITEVPAEVRERHAELAEEIRGHQFRYYVLDSPIVSDGQFDTLLNEL
QAIEDEHPGLVTPESPTQNVGGTFSTEFVAHDHLERMLSLDNVFDGEEFEAWVERVQKEI
GATKYLAELKIDGLAINLLYENGRLTRALTRGDGRTGEDVTLNVRTLEQVPDRLTGTDEF
PVPALVEIRGEVYFRVEDFLALNAKMVEAGKDPYANPRNTAAGSLRQKDPKITKSRNLRL
ICHGLGKREGFEPKRQSEAYDALAAWGLPVSPHSKVLATGEELLEHIKFWGEHRHDAEHE
IDGVVIKVDEVGLQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVNVGRTGRVTPFAVM
EPVKVAGSTVAMATLHNQEEVKRKGVLIGDKVVIRKAGDVIPEVLGPVADARTGEEREFV
MPLRCPNCDTELAYQKEGDIDIRCPNARFCPAQRRERLFHLASRNVFDIEVVGYEAAVAL
LDAGVVHDEGDIFDLDEEKLLEVDLFRTKAGELSANGRKLLDNLEIVKDRPLWKVIVGLS
IRHVGPTAAQALAREFGSLERIENASEEELAGVDGVGPTIVKAAKEWFEVDWHREIVEKW
RAAGVRMEEERDESIPRNLEGLSIVVTGSLNDYSRDEAKEFIMARGGKAAGSVSKKTAFV
VVGDAPGTKYDKAVQLKVPVLDENGFTVLLESGPEAAAELALPADESADEEDSGE
NT seq 2148 nt   +upstreamnt  +downstreamnt
gtgagcagcgaacttccggaaaaccccgagccagtgcaggacatcaccgaggtccccgcc
gaggtccgagaaaggcacgccgaactggcggaggagatccgcgggcaccagttccggtac
tacgtgctggattcaccgatcgtgtccgacggccagttcgacacgctgctcaacgaactc
caggccatcgaggacgagcatccggggctggtgacgccggagtcgccgacgcagaacgtc
ggcggcacgttctcgaccgagttcgtcgcgcacgaccacctcgagcgcatgctcagcctg
gacaacgtcttcgacggcgaagagttcgaggcctgggtcgagcgggtccagaaggagatc
ggcgcgacgaagtacctcgccgagctcaagatcgacgggctcgccatcaacctgctgtac
gagaacggccgcctgacccgcgcgctgaccaggggcgacggccgcaccggcgaggacgtc
acgctcaacgtccgcacgctggagcaggtgccggaccgcctgacgggcaccgacgagttc
cccgtgcccgcgctggtcgagatccgcggcgaggtgtacttccgcgtcgaggacttcctg
gcgctcaacgcgaagatggtcgaggcgggcaaggatccgtacgcgaacccgcgcaacacc
gccgccggatctttgcggcagaaggatccgaagatcacgaagtcccgcaacctgcggctg
atctgccacgggctcgggaaacgcgaaggcttcgagccgaagcgccagtccgaggcgtac
gacgcgctggccgcgtggggcctgccggtctcgccgcacagcaaggtgctcgccaccggc
gaggaactgctggagcacatcaagttctggggcgagcaccgccacgacgccgagcacgag
atcgacggcgtcgtcatcaaggtcgacgaggtcgggctccagcgccgtctcgggacgacg
tcgcgcgcgccgcgctgggcgatcgcctacaagtacccgccggaagaggcgatcaccacc
ctgctggacatccaggtcaacgtcggccgcaccgggcgggtcaccccgttcgcggtgatg
gagccggtgaaggtggccgggtccacggtggcgatggcgacgctgcacaaccaggaagag
gtcaaacgcaagggcgtgctgatcggggacaaggtcgtcatccgcaaggcgggcgacgtc
atccccgaggtgctcggcccggtcgccgacgcgcgcaccggcgaggagcgcgagttcgtc
atgccgttgcgctgccccaactgcgacaccgaactggcgtaccagaaggagggcgacatc
gacatccgttgcccgaacgcgcggttctgcccggcgcagcggcgggagcggctgttccac
ctggcgagccggaacgtcttcgacatcgaggtggtcgggtacgaggccgcggtggcgctg
ctggacgccggtgtcgtgcacgacgaaggcgacatcttcgatctggacgaggagaagctg
ctcgaggtcgatctgttccgtaccaaggcgggggagctttcggccaacgggcgcaaactg
ctggacaacctcgagatcgtcaaggaccgtccactgtggaaggtcatcgtcgggctctcg
atccggcacgtcggcccgacggcggcgcaggcgctcgcgcgggaattcggttcgctggaa
cggatcgaaaacgcctccgaagaggagctcgccggcgtcgacggggtcggcccgaccatc
gtgaaggccgcgaaagagtggttcgaggtcgactggcaccgcgaaatcgtcgaaaagtgg
cgtgcggcgggcgtgcggatggaggaggagcgcgacgagtccatcccgcgcaacctcgaa
ggcctgtcgatcgtcgtcaccggttcgctgaacgactactcccgtgacgaggccaaggag
ttcatcatggcccgcggcgggaaggccgccggttcggtgtcgaagaagacggcgttcgtc
gtcgtcggggacgcgccggggacgaagtacgacaaggccgtccagctgaaggtgccggtg
ctcgacgagaacggcttcacggtgctgctggagagcggccccgaggcggccgcggaactc
gcgttgccggccgatgagtccgccgatgaggaggacagcggtgagtga

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