Amycolatopsis sp. AA4: CU254_06785 Help Entry CU254_06785       CDS       T05278                                  Name (GenBank) NAD-dependent DNA ligase LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism amyc  Amycolatopsis sp. AA4 Pathway amyc03030   DNA replication amyc03410   Base excision repair amyc03420   Nucleotide excision repair amyc03430   Mismatch repair Brite KEGG Orthology (KO) [BR:amyc00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     CU254_06785    03410 Base excision repair     CU254_06785    03420 Nucleotide excision repair     CU254_06785    03430 Mismatch repair     CU254_06785  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:amyc03032]     CU254_06785    03400 DNA repair and recombination proteins [BR:amyc03400]     CU254_06785 Enzymes [BR:amyc01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      CU254_06785 DNA replication proteins [BR:amyc03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      CU254_06785 DNA repair and recombination proteins [BR:amyc03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      CU254_06785    NER (nucleotide excision repair)     GGR (global genome repair) factors      CU254_06785    MMR (mismatch excision repair)     DNA ligase      CU254_06785   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       CU254_06785 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 HHH Nlig-Ia Motif Other DBs NCBI-ProteinID:  ATY10198 LinkDB All DBs Position 1409036..1411195 Genome browser AA seq 719 aa AA seqDB search MSSTDLPQDPVAVEAAQDVTDVPADVRERHGALAEEIRGHQFRYYVLDSPIISDGQFDAL LGDLQKIEDEYPALVTPDSPTQNVGGTFSTEFTAHDHLERMLSLDNVFTAEEFLAWVERV EKEIGSAEYLAELKIDGLAINLLYENGKLTRGLTRGDGRTGEDVTLNIRTLDQVPDRLTG TDEFPVPKLVEVRGEVYFRVEDFLELNAKMVEAGKLPYANPRNTAAGSLRQKDPKITRER RLRLICHGLGKRDGFEPVTQSHAYDALAAWGLPVSPYTRVLRTGKELTEHIAYWGEHRHD AEHEIDGVVIKVDQVALQRRLGTTSRAPRWAIAYKYPPEEAITMLLDIQVGVGRTGRVTP FAVTEPVKVAGSTVARATLHNQEEVKRKGVLIGDRIVIRKAGEVIPEVLGPVVDARTGDE REFVMPTECPECGTKLAYQKEGDKDIRCPNSQFCPAQLRERLFHLAGRGAFDIEVLGYEA AVALLDARVVADEGDVFDLNEESLAEVELFRTKAGDLSANARKLLVNLDSAKDRPLWKVI VALSIRHVGPTAAQALAREFGSLQRIEDTTEEELADVDGVGPTIAHAVQEWFEVDWHREI VEKWRRAGVRMEEERDESIPRNLEGLSIVVTGSLDGFSRDEAKEAIMARGGKAAGSVSKK TSFVVVGDAPGSKYDKAVQLKVPVLDENGFRALLERGPEAAAELALDTGADEEAEGGDE NT seq 2160 nt NT seq  +upstreamnt  +downstreamnt gtgagcagcaccgaccttccccaagacccggtggccgtggaggccgcccaggacgtgacc gatgtgccggccgacgtgcgcgagcggcacggcgcgctcgccgaggagatccgcggccat cagttccggtactacgtgctggactcgccgatcatctccgacggccagttcgacgcgctc ctcggtgacctccagaagatcgaggacgagtacccggcgctggtcacgccggattcgccg acccagaacgtcggcggcacgttctccaccgaattcaccgcgcacgaccacctcgagcgc atgctgagcctggacaacgtgttcaccgccgaggagttcctcgcgtgggtcgagcgcgtc gagaaggaaatcgggtccgcggagtacctggccgagctgaagatcgacggcttggccatc aacctgctctacgaaaacggcaagctcaccaggggtctcacccgcggcgacgggcgcacg ggcgaggacgtcacgctcaacatccgcaccctcgaccaggtgccggaccggctcaccggc accgacgagttcccggtgccgaagcttgtcgaggtgcgtggcgaggtctacttccgcgtc gaggacttcctcgagttgaatgcgaaaatggtcgaggcgggcaagcttccgtacgcgaac ccgcgcaacacggcggccgggtcgttgcggcagaaagacccgaaaatcaccagggaacgc aggctgcggctgatctgtcacggcctcggcaagcgcgacggcttcgagccggtcacgcag tcgcatgcctacgacgcgttggcggcgtgggggctgccggtgtcgccgtacacgcgtgtc ctgcgcacaggcaaggaactcaccgagcacatcgcctactggggtgaacatcggcacgac gccgagcacgagatcgacggcgtggtgatcaaggttgaccaggtcgccttgcagcgtcgc ctcggcactacgtcgcgcgcgccgcggtgggccatcgcctacaaatatccgccggaagaa gcgatcacgatgctgctcgacatccaggtcggcgtgggacgcaccggaagggtcacgccg ttcgctgtcaccgaaccggtgaaggtcgcgggctcgacggtcgcgcgggcgacgctgcac aaccaggaagaggtcaagcgcaagggtgtgctgatcggcgaccggatcgtgatccgcaag gccggcgaagtgattcccgaggtgcttggtcccgtcgtcgacgcgcggaccggcgacgag cgtgaattcgtgatgcccaccgaatgtccggaatgcggcacgaaactcgcctatcaaaag gaaggcgacaaggacatccgctgcccgaacagtcagttttgccccgcgcagttgcgggaa cggctgttccatctcgccgggcgcggtgcgttcgacatcgaagtgctcgggtacgaggcg gcggtcgcgctgctcgacgccagggtagtcgccgacgagggcgacgtattcgatctcaac gaggagtcgctcgccgaggtggagttgttccgcaccaaggcgggcgacctgtcggcgaac gcgcggaaactgctggtgaacctcgattcggcgaaggaccgtccgctgtggaaagtgatc gtcgccctgtcgatccggcacgtcgggccgaccgcggcgcaggcgctcgcgcgcgaattc ggttcgctgcaacggattgaggacacgaccgaggaggaactcgcggacgtcgacggcgtc ggtccgaccatcgcgcacgccgttcaggaatggttcgaggtcgattggcaccgggagatc gtcgaaaaatggcgacgggccggggttcggatggaggaagagcgcgacgagtccatcccg cggaatctcgagggcctgtcgatcgtggtgaccgggtcgctcgacgggttttcccgtgac gaagcgaaagaagccatcatggcgcgcggtggcaaggccgcgggatcggtgtcgaagaag acgtcgttcgtcgtggtgggcgacgctccgggttcgaagtacgacaaggccgtgcagctg aaggtgccggtcctggacgagaacgggttccgcgcgttgctggagcgcggcccggaggcg gctgcggaactggcgctcgacaccggtgcggacgaggaagctgagggcggcgatgagtga

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