Amycolatopsis sp. DSM 110486: K1T34_27040
Help
Entry
K1T34_27040 CDS
T10626
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amyd Amycolatopsis sp. DSM 110486
Pathway
amyd03030
DNA replication
amyd03410
Base excision repair
amyd03420
Nucleotide excision repair
amyd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K1T34_27040 (ligA)
03410 Base excision repair
K1T34_27040 (ligA)
03420 Nucleotide excision repair
K1T34_27040 (ligA)
03430 Mismatch repair
K1T34_27040 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amyd03032
]
K1T34_27040 (ligA)
03400 DNA repair and recombination proteins [BR:
amyd03400
]
K1T34_27040 (ligA)
Enzymes [BR:
amyd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K1T34_27040 (ligA)
DNA replication proteins [BR:
amyd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K1T34_27040 (ligA)
DNA repair and recombination proteins [BR:
amyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K1T34_27040 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K1T34_27040 (ligA)
MMR (mismatch excision repair)
DNA ligase
K1T34_27040 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K1T34_27040 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QYN26206
LinkDB
All DBs
Position
5556209..5558356
Genome browser
AA seq
715 aa
AA seq
DB search
MAAPAEPAVAAQDVTDVPADVRERHGALAEDVRGHQFRYYVLDSPIVSDGQFDALLGELQ
ALEDEYPALVTPDSPTQNVGGTFSTGFTAYDHLERMLSLDNVFDTDEFLTWVERVEKEIG
STEYLAELKIDGLAINLLYEDGKLTRGLTRGDGRTGEDVTLNIRTLEQVPDELTGTDEFP
VPKLIEVRGEVFFRVEDFLELNAKMVEAGKPPYANPRNTAAGSLRQKDPRITKERRLRLI
CHGLGKREGFEPVTQSHAYDALVAWGLPVSPHTRVLHTAKELTDHIAYWGEHRHDAEHEI
DGVVIKVDQVALQRRLGTTSRAPRWAIAYKYAPEEAITTLLDIQVGVGRTGRVTPFAVTE
PVKVAGSTVARATLHNAEEVKRKGVLIGDRIVIRKAGDVIPEVMGPVVDARTGDEREFVM
PTHCPECGTELAYQKEGDKDIRCPNTRFCPAQLRERLFHLAGRGAFDIEVLGYEAAVALL
DARVVADEGDVFDLSEDALSEVELFRTKAGDLSANARKLLTNLDVAKDRPLWKVIVALSI
RHVGPTAAQALAREFGSIERVEEASEEELADVDGVGPTIAHAVQEWFEVDWHREIVEKWR
RAGVRMEEERDDSIPRHLEGLSIVVTGSLDGFSRDEAKEAIMARGGKAAGSVSKKTAFVV
AGEAPGSKYEKAAQLKVPVLDEGGFRVLLERGPDAAAEVALDTGTAEPDEEPSDG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcccccgccgaaccggcagtggcggcccaggacgtcaccgacgtccccgccgac
gtgcgcgaacgccacggcgccctcgccgaggacgtccgcgggcaccagttccgctactac
gtgctggactcgcccatcgtctccgacgggcagttcgacgcgctcctcggcgagctgcag
gcgctcgaggacgagtacccggcgctggtcacgccggactcgccgacgcagaacgtcggc
ggcacgttctccaccgggttcaccgcgtacgaccacctcgaacgcatgctgagcctggac
aacgtcttcgacaccgacgagttcctcacctgggtggagcgcgtcgagaaggagatcggt
tccacggagtacctggccgagctgaagatcgacggcctggccatcaacctcctctacgag
gacggcaagctcacgcgtggcctgacccgcggcgacggccgcacgggcgaggacgtcacg
ctcaacatccgcacgctggagcaggtccccgacgagctgaccggcaccgacgagttcccc
gtgccgaagctcatcgaggtgcgcggcgaggtcttcttccgcgtcgaggacttcctggaa
ctcaacgcgaagatggtcgaagcgggcaagccgccgtacgcgaacccgcgcaacacggcc
gccgggtcgttgcggcagaaggacccgcgcatcaccaaggaacgccggctgcggctgatc
tgccacggcctgggcaagcgcgagggcttcgaaccggtcacgcagtcgcacgcgtacgac
gcgctcgtggcgtgggggctgccggtttcgccgcacacgcgcgtgctgcacacggcgaag
gagctcaccgaccacatcgcgtactggggcgagcaccggcacgacgccgagcacgagatc
gacggcgtcgtgatcaaggtcgaccaagtcgcgctgcaacgccggctgggcaccacttcg
cgcgcgccgcgctgggcgatcgcctacaagtacgcgccggaagaggcgatcacgacgttg
ctcgacatccaggtgggcgtcgggcgcacggggcgcgtcacgccgttcgccgtcacggag
ccggtgaaggtcgcgggttcgacggtggcgcgcgcgacgctgcacaacgcggaagaggtc
aagcgcaagggcgtgctgatcggcgaccgcattgtgatccgcaaggcgggcgacgtcatc
cccgaggtgatgggaccggtcgtcgacgcgcgcacgggcgacgagcgcgagttcgtcatg
cccacgcactgcccggaatgcggcacggaactcgcctaccagaaggaaggcgacaaggac
atccgctgcccgaacacccgtttctgccccgcgcagctgcgggaacggctgttccacctg
gccgggcgtggcgcgttcgacatcgaggtgctcgggtacgaggcggccgtcgcgctgctc
gacgcgcgcgtggtcgccgacgagggcgacgtgttcgacctcagcgaggacgcgctgtcc
gaggtggaactgttccgcaccaaggcgggcgacctctcggccaacgcgcggaaactcctg
acgaacctcgacgtggcgaaggaccgtcccttgtggaaggtgatcgtcgcgctgtcgatc
cgccacgtcgggcccacagcagcgcaggcgctggcgcgcgagttcggctcgatcgagcgc
gtcgaggaggcgagtgaggaagagctcgccgacgtcgacggcgtcgggccgaccatcgcg
cacgccgtgcaggagtggttcgaagtcgactggcaccgggagatcgtcgaaaaatggcga
cgcgccggcgtgcggatggaagaggaacgcgacgactcgatcccgcgtcacctcgagggg
ctgtcgatcgtggtcacaggctcgctcgacggattctcccgcgacgaggccaaggaggcc
atcatggcccgcggcggcaaggcggcggggtcggtgtcgaagaagaccgcgttcgtcgtg
gcgggcgaggcgccggggtcgaagtacgagaaggccgcgcagctcaaggtgccggtgctc
gacgagggcggcttccgcgtgctgcttgagcggggtccggacgcggccgccgaggtggcg
ctggataccggcaccgccgagccggacgaagagccctccgatgggtga
DBGET
integrated database retrieval system
