Amycolatopsis sp. EV170708-02-1: MJQ72_18240
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Entry
MJQ72_18240 CDS
T10873
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amye Amycolatopsis sp. EV170708-02-1
Pathway
amye03030
DNA replication
amye03410
Base excision repair
amye03420
Nucleotide excision repair
amye03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MJQ72_18240 (ligA)
03410 Base excision repair
MJQ72_18240 (ligA)
03420 Nucleotide excision repair
MJQ72_18240 (ligA)
03430 Mismatch repair
MJQ72_18240 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amye03032
]
MJQ72_18240 (ligA)
03400 DNA repair and recombination proteins [BR:
amye03400
]
MJQ72_18240 (ligA)
Enzymes [BR:
amye01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MJQ72_18240 (ligA)
DNA replication proteins [BR:
amye03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MJQ72_18240 (ligA)
DNA repair and recombination proteins [BR:
amye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MJQ72_18240 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MJQ72_18240 (ligA)
MMR (mismatch excision repair)
DNA ligase
MJQ72_18240 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MJQ72_18240 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UMP06630
LinkDB
All DBs
Position
3869246..3871378
Genome browser
AA seq
710 aa
AA seq
DB search
MSSELPENPGPAQDVTDVPADVRERHAELAEEIRGHQFRYYVLDSPIVSDGQFDELLNEL
QAIEDEHPGLVTPESPTQNVGGTFSTEFVAHDHLERMLSLDNVFDTEEFETWVERVQKEI
GATKYLAELKIDGLAINLLYENGRLTRALTRGDGRTGEDVTLNVRTLEQVPERLTGTDEF
PVPALVEVRGEVFFRVEDFLALNAKMVEAGKDPYANPRNTAAGSLRQKDPKITKSRNLRL
ICHGLGKREGFEPKRQSEAYDALAAWGLPVSPHSKVLTSGEELLEHIRYWGEHRHDAEHE
IDGVVIKVDEVALQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVNVGRTGRVTPFAVM
EPVKVAGSTVAMATLHNQEEVKRKGVLIGDKVVIRKAGDVIPEVLGPVADARTGEEREFV
MPLRCPNCDTELAYQKEGDIDIRCPNAQFCPAQRRERLFHLASRNVFDIEVVGYEAAVAL
LDAGVVHDEGDIFDLDEEKLLQVELFRTKAGELSANGRKLLENLESVKDRPLWRVIVGLS
IRHVGPTAAQALAREFGSLERIENASEEELAAVDGVGPTIVRAAKEWFEVDWHREIVEKW
RAAGVRMEEERDESVPRNLEGLSIVVTGSLNDYSRDEAKEFIMARGGKAAGSVSKKTAFV
VVGDAPGTKYDKAVQLKVPVLDENGFRVLLEDGPEAAAELALVTEEEPGD
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcgaacttcccgagaaccccggtccggcgcaggacgtcacggacgtgcccgcc
gacgtccgcgaaaggcatgccgagctggcggaggagatccgcgggcaccagttccggtac
tacgtgctggattcaccgatcgtgtccgacggccagttcgacgagctgctcaacgaactc
caggccatcgaggacgaacatccggggctggtgacgccggagtcgccgacgcagaacgtc
ggtggcaccttctccaccgagttcgtcgcgcacgaccacctcgagcgcatgctcagcctc
gacaacgtcttcgacaccgaggagttcgagacctgggtcgagcgggtccagaaggagatc
ggcgcgacgaagtacctcgccgaactgaagatcgacgggctcgcgatcaacctgctgtac
gagaacggccgcctcacccgcgcgctgaccaggggcgacggccgcaccggtgaggacgtc
acgctcaacgtccgcacgctggagcaggtgcccgagcggctgaccgggacggacgagttc
cctgtgcccgcgctggtcgaggtccgcggcgaggtgttcttccgcgtcgaggacttcctg
gcgctgaacgcgaagatggtcgaggcgggcaaggatccgtacgcgaacccgcgcaacacg
gccgctggttcgctacggcagaaggatcccaagatcacgaagtcgcgcaatctgcggctg
atctgccacggcctcggcaaacgcgagggtttcgagccgaagcgtcaatccgaggcgtac
gacgcgctcgccgcgtggggcctgccggtctcgccgcacagcaaggtgctgacttccggc
gaggagctgctggagcacatccggtactggggcgagcatcgccacgacgccgagcacgag
atcgacggcgtcgtcatcaaggtcgacgaggtcgcgctgcagcggcgtctaggcacgacg
tcgcgggcgccgcgctgggcgatcgcctacaagtacccgcccgaagaggcgatcaccacg
ctcctggacatccaggtcaacgtcggccgcaccggtcgcgtcaccccgttcgcggtgatg
gagccggtgaaggtggccggatccacggtcgcgatggcgacgctgcacaaccaggaagag
gtcaagcgcaagggtgtgctgatcggggacaaggtcgtcatccgcaaggcgggcgacgtc
atccccgaggtgctcggcccggtggcggacgcgcgcaccggcgaagagcgcgagttcgtc
atgccgctgcgctgccccaactgcgacaccgaactggcgtaccagaaggagggcgacatc
gacatccgttgcccgaacgcgcagttctgccccgcgcagcggcgggagcggctgttccat
ctggcgagccggaacgtcttcgacatcgaggtggtcgggtacgaggccgcggtggcgctg
ctggacgccggtgtcgtgcacgacgagggcgacatcttcgacctggacgaggagaagctg
ctccaggtcgagctgttccgcaccaaggcgggggagctctcggccaacgggcgcaaactg
ctggagaacctggaatcggtcaaggatcgtccactgtggagggtcatcgtcgggctgtcg
atccggcacgtgggcccgacggccgcacaggcgctcgcccgggaattcggttcgctggaa
cggatcgagaacgcctccgaagaggagctcgccgccgtcgacggggtcgggccgaccatc
gtgcgggccgcgaaggaatggttcgaggtcgattggcaccgcgagatcgtcgagaagtgg
cgcgcggcgggcgtgcggatggaggaggagcgcgacgagtccgtcccgcgcaacctcgaa
ggcctgtccatcgtcgtcaccggctcgctgaacgactactcccgagacgaggccaaggag
ttcatcatggcccgcggcgggaaggcggccggttcggtgtcgaagaagacggcgttcgtc
gtcgtcggcgacgcgccgggcacgaagtacgacaaggccgtgcagctgaaagtgccggtg
ctcgacgagaacggcttccgcgtgctcctggaagacgggcccgaggccgcggccgagctg
gcgctggtgaccgaggaggaacccggtgactga
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integrated database retrieval system
