Amylibacter sp. IMCC11727: QBD29_09945
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Entry
QBD29_09945 CDS
T08989
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amyl
Amylibacter sp. IMCC11727
Pathway
amyl03030
DNA replication
amyl03410
Base excision repair
amyl03420
Nucleotide excision repair
amyl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QBD29_09945 (ligA)
03410 Base excision repair
QBD29_09945 (ligA)
03420 Nucleotide excision repair
QBD29_09945 (ligA)
03430 Mismatch repair
QBD29_09945 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amyl03032
]
QBD29_09945 (ligA)
03400 DNA repair and recombination proteins [BR:
amyl03400
]
QBD29_09945 (ligA)
Enzymes [BR:
amyl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QBD29_09945 (ligA)
DNA replication proteins [BR:
amyl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QBD29_09945 (ligA)
DNA repair and recombination proteins [BR:
amyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QBD29_09945 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QBD29_09945 (ligA)
MMR (mismatch excision repair)
DNA ligase
QBD29_09945 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QBD29_09945 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WGI20439
LinkDB
All DBs
Position
complement(1957175..1959301)
Genome browser
AA seq
708 aa
AA seq
DB search
MLAQRKPSELDKVEAIAELARLAEILNAANTDYHTHDAPKLSDAEYDDLKRRNAEIEALF
PDLKRDDSPSLKVGAPISSAFSKVEHSVRMLSLGNAFTDEDVTEFAARIRKYLGLRNTDS
VAFTAEPKIDGLSLALRYENGTLVQAATRGDGQTGENVTLNARTISDVPHHIKDAPAVVE
VRGEVYMSHADFDALNAAQEAKGGKTFANPRNAAAGSLRQINPEITKERPLLFFAYAWGE
LSEPLAETQFDAIERLKSFGFSTNPLTRRHETVSSMLAHYQEIESQRATLGYDIDGVVYK
VDDLTLQSRLGFRATTPRWAIAHKFPAELAYTTLESIEIQVGRTGAMSPVARLKPVTVGG
VVVSNATLHNADYIAGVDSKGAPIREGRDLREGDWVEIYRAGDVIPKVRDVDITKRAATS
VPYTFPKTCPECGSDVVREEGDSVAYCSGGLICPAQAVEKLKHFVSRSAFDIDGLGAKQI
EMFFADVDLPIKEPADIFTLQARDAANPLAKLKNRNGFGDTSVDNLFSAINEKRTIALNR
LIFALGIRHVGETSGALLARHYSSWTNFFDAMTAAKDKSGPAWDDLNDIDGVGSVMAGAL
VDAFHTDSTRKAIERLIAELDVQDVVAPDTSGSDVAGKTVVFTGTLEKMTRAEAKSRAEA
LGAKVSGSVSGKTDLLVAGPGAGSKAKKAQSLGVKIISEDDWLVLIET
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgttggcgcagcgcaaaccgtcggaactggacaaggtagaagccattgcagaactggcg
cgccttgcagagattttgaatgcggcaaacacggattatcacacccatgatgcgcccaaa
ctgagcgacgccgaatatgacgatctaaaacggcgaaacgccgaaatcgaagcgctcttt
cccgatctcaaacgcgatgacagcccctcattgaaagtgggtgcgcccatttcttctgct
ttttccaaggtcgaacacagtgtgcgcatgttgtctttgggaaacgcttttaccgatgaa
gatgtcaccgaatttgccgcccgcattcgcaaatatctcggcttacgcaacaccgattcc
gtggcctttacggcagaacccaaaattgatggcctgtctctggctttgcgctatgaaaac
ggcactttggttcaagctgccacgcgcggtgatggacaaacaggcgaaaacgtcacccta
aacgcacgcaccatcagcgatgtaccccaccacatcaaagacgcacctgccgtggtcgag
gtgcgcggcgaagtctacatgagccacgctgattttgacgcactgaacgcggctcaagag
gcaaagggcggtaaaacattcgccaacccgcgcaacgccgccgcaggatcattgcgccaa
atcaaccctgaaatcaccaaagaacgcccgctgctgttctttgcctacgcgtggggagag
ctgtcagaaccgctcgccgaaacacaatttgacgcgattgagcggctaaaatcatttggg
ttttccaccaatccgctgacacgccgccatgaaacggtgtcttccatgctggcccactac
caagagattgaatcccagcgtgccacgctgggctatgacattgacggtgtcgtttacaaa
gtggacgacctgactctgcaatcgcgccttgggtttcgcgcgaccacgccgcgttgggcc
atcgcccataaattccctgcagaattggcctataccacgctcgaatccatcgaaattcag
gtgggccgcactggggctatgtcccctgttgcccgcctaaaacccgtcaccgtaggcggc
gtggttgtgtcaaacgctacactgcacaacgcagattatatcgcaggcgttgacagcaaa
ggcgccccaatccgcgaaggtcgcgatctgcgcgaaggggattgggtggaaatctaccgc
gctggcgatgtaatccccaaagtgcgcgatgtcgacatcacaaaacgcgccgccacaagc
gtgccttacacctttcctaaaacctgtcccgaatgcggctctgacgtagtacgcgaagaa
ggagacagcgttgcctattgctctggcgggttgatctgccccgcacaagcggttgaaaag
ctaaaacattttgtgtcgcggtctgcattcgacatcgacggcttaggtgcaaaacagatc
gaaatgttctttgctgacgtggatcttccgatcaaagaaccggccgatattttcacgtta
caggcgcgtgacgccgccaacccattggccaaattgaaaaaccgcaacgggtttggcgat
acatcggtggacaatctgttttccgcgatcaatgaaaaacgcacaattgcgctaaaccgt
ttgattttcgcccttggtattcgccatgtcggggaaaccagcggcgcactgctggcacgc
cattattccagctggaccaatttctttgacgcaatgaccgccgcaaaagacaaatctggc
cccgcttgggacgatctaaacgacattgatggcgtgggcagcgttatggctggcgcattg
gtcgacgcctttcacactgacagcacacgcaaagcgattgaacggcttatcgcggaactc
gatgtccaagatgtggtcgcgccagacacatctggcagtgatgtggcgggcaaaaccgtt
gtctttacaggaacccttgaaaaaatgacccgtgcagaggccaaatctcgtgccgaggca
ttgggagccaaagtgtcaggctctgtttccggcaaaacggaccttttggttgcgggacca
ggtgcgggcagtaaggcgaaaaaagcgcaatccctcggggtgaaaatcatcagcgaagat
gattggctggtactgatcgaaacatga
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