Malaciobacter mytili: AMYT_1363
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Entry
AMYT_1363 CDS
T05895
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amyt
Malaciobacter mytili
Pathway
amyt03030
DNA replication
amyt03410
Base excision repair
amyt03420
Nucleotide excision repair
amyt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amyt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMYT_1363 (ligA)
03410 Base excision repair
AMYT_1363 (ligA)
03420 Nucleotide excision repair
AMYT_1363 (ligA)
03430 Mismatch repair
AMYT_1363 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amyt03032
]
AMYT_1363 (ligA)
03400 DNA repair and recombination proteins [BR:
amyt03400
]
AMYT_1363 (ligA)
Enzymes [BR:
amyt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMYT_1363 (ligA)
DNA replication proteins [BR:
amyt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMYT_1363 (ligA)
DNA repair and recombination proteins [BR:
amyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMYT_1363 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMYT_1363 (ligA)
MMR (mismatch excision repair)
DNA ligase
AMYT_1363 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMYT_1363 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
DNA_ligase_ZBD
DUF6646
Motif
Other DBs
NCBI-ProteinID:
AXH14944
LinkDB
All DBs
Position
complement(1343329..1345287)
Genome browser
AA seq
652 aa
AA seq
DB search
MVDIITKEEYEQNIQTLIKWAHAYYVEDNPIASDEEYDKLARICLAYEQTYPEFSHANSP
NKRVGGVILEGFEKASHLSRMWSQEDVFNTQELIDWINRAKKVNEKLEFYCEPKFDGASL
NLIYENGLLKQAITRGDGSIGEDVTNNVKTIHSIPLEIKEKSLIEIRGEVVIKKADFNKI
NEQRAKNNEPLFANPRNAAAGSLRQLDPNITAKRKLFFNVWGVGQNSLGFKNNSEMMNYI
YSLGFVKPPLQKVCKNVEEIEELYHKIIASRNSIEMMLDGMVIKIDDLETQEELGYTVKF
PRFSCAYKFPAVEKTTKVKDIILQVGRTGVITPVALVEPTLIDGSTVERASLHNFDEIAR
LDLRINDEVIIIKSGDIIPKITKVFFDRRDGSQKEVLRPTTCPKCESELLDEGTLIKCQN
LDCPSIVTNSIIYFASKNCMNIDGLGIKIVELLVEKRKIYDILDLYSLKYEDLVDLEGFK
DKKINNLLNAIENTKGSQLYRVINALGIEHIGEVASKQICLEFGLDVINVDIDSLLDLDG
IGEQMANSFVEFMRVNHHIVTKLFEIINPKVEEKVQISENAFKGKTVVLTGTMSVSRGEI
KKKLENLGAKVSSSVSKKTDFVIYGEEAGSKYDKAVSLGVITLTEEQMNKMI
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggtagatataataacaaaagaagaatatgaacaaaatatacaaacactaataaaatgg
gcacatgcttattatgtggaagataatccaattgcaagtgatgaagagtatgataaactt
gcaagaatatgcttagcatatgagcaaacttatccagaattttcccatgcaaactcccca
aataaaagagttggaggagttattttagaaggttttgaaaaagcctcacatttaagtaga
atgtggtcacaagaggatgtttttaatactcaagaattaattgattggataaatagagct
aaaaaagtaaatgaaaaactagagttttactgtgagccaaaatttgatggagctagttta
aatcttatttatgaaaatggtcttttaaaacaagcaattacaagaggtgatggaagtata
ggagaagatgttacaaataatgtaaaaactatacactctatacctttagaaataaaagaa
aaatcacttattgaaattagaggtgaagtagtaataaaaaaagctgattttaataagata
aatgaacaaagagcaaaaaacaatgaacctttatttgcaaatcctagaaatgcagcggca
ggaagtttaaggcaactagacccaaatataactgcaaaaagaaaacttttttttaatgtt
tggggagtaggacaaaatagcttaggttttaaaaataatagtgaaatgatgaattatatt
tattcattaggttttgtaaaacctcctttacaaaaagtatgtaaaaatgtagaagagata
gaagaactttatcataaaattattgcttcaagaaatagtatagaaatgatgctagatgga
atggttattaaaattgatgatttagaaacacaagaagagttaggatatacagtaaaattt
cctagattttcatgtgcatataaattcccagcagttgaaaaaacaacaaaagtaaaagat
attattttgcaagttggaagaacaggagttataacacctgttgctttagttgaaccaaca
cttatagatggttcaactgttgaaagagcaagcttacataattttgatgaaattgcaaga
ttagatttaagaataaatgatgaagtaattattattaaaagtggagatattattccaaaa
attactaaagtattttttgatagaagagatgggagccaaaaagaagttttaagaccaact
acttgtcctaaatgtgaaagtgagttattggatgaaggtacattaattaaatgtcaaaat
ttagattgtccaagtattgtaactaactcaattatctattttgcttcaaaaaattgtatg
aatatagatggattaggtataaaaattgttgaattattagttgaaaaaagaaaaatctat
gatattttagatttatactctttaaaatatgaagatttagtagatttagaaggttttaaa
gataaaaaaataaataatcttttaaatgctattgaaaatactaaaggaagccaactttat
agagttataaatgctttaggaatcgaacatataggagaagttgcatcaaaacaaatctgt
ttagagtttggtttagatgtgattaatgtggatattgattctttattagacttagatgga
attggtgaacaaatggcaaactcttttgtggagtttatgagagtaaatcatcatattgtt
acaaaactttttgagataattaatcctaaagttgaagaaaaagtacaaataagtgaaaat
gcttttaaaggaaaaaccgtagttttaactggaactatgagtgttagtcgaggtgaaatt
aaaaaaaagttagaaaacttaggagcaaaagttagttctagtgtatctaaaaaaacagat
tttgttatatatggagaagaagcaggtagcaagtatgataaagctgttagtttaggagtt
attacacttacagaagaacagatgaataaaatgatataa
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