Amycolatopsis sp. YIM 10: YIM_09575 Help Entry YIM_09575         CDS       T06270                                  Symbol ligA1 Name (GenBank) DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism amyy  Amycolatopsis sp. YIM 10 Pathway amyy03030   DNA replication amyy03410   Base excision repair amyy03420   Nucleotide excision repair amyy03430   Mismatch repair Brite KEGG Orthology (KO) [BR:amyy00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     YIM_09575 (ligA1)    03410 Base excision repair     YIM_09575 (ligA1)    03420 Nucleotide excision repair     YIM_09575 (ligA1)    03430 Mismatch repair     YIM_09575 (ligA1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:amyy03032]     YIM_09575 (ligA1)    03400 DNA repair and recombination proteins [BR:amyy03400]     YIM_09575 (ligA1) Enzymes [BR:amyy01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      YIM_09575 (ligA1) DNA replication proteins [BR:amyy03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      YIM_09575 (ligA1) DNA repair and recombination proteins [BR:amyy03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      YIM_09575 (ligA1)    NER (nucleotide excision repair)     GGR (global genome repair) factors      YIM_09575 (ligA1)    MMR (mismatch excision repair)     DNA ligase      YIM_09575 (ligA1)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       YIM_09575 (ligA1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT Nlig-Ia HHH BRCT_2 Motif Other DBs NCBI-ProteinID:  QFU87123 UniProt:  A0A5P9PG15 LinkDB All DBs Position 1922887..1925037 Genome browser AA seq 716 aa AA seqDB search MSSEELPSDQVAPEAAQDIADVPADVRERHGALAEEIRGHQFRYYVLDSPTISDGQFDVL LRELEELEQEYPGLATPDSPTQRVGGTFSTEFTAYDHLERMYSLDNAFDAEELAAWVERT EKEIGSTQYLCELKIDGLAINLLYEKGKLTRALTRGDGRTGEDVTLNVRTLDQVPDRLTA TDRFPVPDLVEVRGEVFFRVEDFTELNARLVEAGKPPFANPRNTAAGSLRQKDPKVTKSR KLRLICHGLGKRDGFEPTRQSEAYDALAAWGLPVSAHTKVLTSAAELSEHVEYWGEHRHD AEHEIDGVVIKVDQVSLQRRLGTTSRAPRWAIAYKYPPEEATTKLLDIQVNVGRTGRVTP FAVMEPVKVAGSTVAMATLHNAEEVKRKGVLIGDRVVIRKAGDVIPEVLGPVVDARTGEE REFLMPTRCPECGTKLAYQKEGDVDIRCPNARTCPAQLRERLFHLAGRGAFDIEVLGYEA ASALLESGAVADEGDVFDLDEARLSEVELFRTKAGELSANARRLLANLDSAKDRPLWKVI VGLSIRHVGPTAAQALAREFGSLELIEQATEEQLADVDGVGPTIAHAVQEWFEVDWHREV VEKWRRAGVRMEEERDTSIPRNLEGLSIVVTGSLDTFSRDEAKEVIMARGGKAAGSVSKK TAFVVVGDSPGTKYDKAVQLKVPVLDENGFRVLLDRGPEAAAEVALVPEEPAAAEE NT seq 2151 nt NT seq  +upstreamnt  +downstreamnt gtgagcagcgaagaacttccgtcagaccaggtcgctcccgaggccgcgcaggacatcgcg gacgtccccgccgacgtccgcgagcgccacggcgcgctcgccgaggagatccgcgggcac cagttccggtactacgtgctggactcgccgaccatttcggacggacagttcgacgtcctg ctgcgtgagctggaagagctggagcaggagtatcccggactggccactccggactcgccg acgcagcgggtcggcggcaccttctccaccgagttcaccgcgtacgaccacctcgagcgc atgtacagcctggacaacgcgttcgacgccgaggagctggccgcgtgggtggagcgcacg gagaaggagatcggctccacgcagtacctgtgcgagctgaagatcgacgggctggcgatc aacctgctctacgagaagggcaagctgaccagggcgctgacccgcggcgacggccgcacc ggtgaggacgtcacgctcaacgtccgcaccctggaccaggtgccggacaggctgaccgcc accgaccggttcccggtgccggatctggtcgaggtgcgcggtgaggtgttcttccgggtg gaggacttcaccgagctgaacgcgcggctggtcgaggcgggcaagccgccgttcgcgaac ccgcgcaacaccgccgccggttcgctgcggcagaaggatccgaaggtgaccaagagccgc aagctgcggctgatctgccacggtctcggcaagcgcgatggcttcgaacccacgcggcag tccgaggcctacgacgcgctggcggcctggggactgccggtttccgcgcacaccaaggtg ctcacctcggccgccgagctgagcgagcacgtcgagtactggggcgagcaccggcacgac gccgagcacgagatcgacggcgtggtgatcaaggtcgaccaggtgtcgctgcagcgccgc ctcggcaccacctcgcgcgcgccgcgctgggcgatcgcctacaagtacccgccggaggag gccaccaccaagctgctcgacatccaggtcaacgtcgggcgcaccggccgggtcaccccg ttcgcggtgatggagccggtgaaggtggccgggtccaccgtggcgatggccaccctgcac aacgccgaggaggtcaagcgcaagggcgtgctgatcggcgaccgggtggtgatccgcaag gccggtgacgtgattcccgaggtgctcgggccggtggtggacgcgcgcaccggcgaggaa cgcgagttcctgatgcccacgcgctgccccgaatgcggcacgaagctcgcctaccagaag gaaggcgacgtcgacatccgctgcccgaacgcgcggacctgcccggcgcagctgcgcgag cggctgttccacctggccgggcgcggtgccttcgacatcgaggtcctcggctacgaggcc gcgtcggcgctgctggagtcgggcgcggtggccgacgagggcgacgtgttcgacctcgac gaggcgcgactgtccgaagtggagttgttccgcaccaaggcgggcgagctttcggccaac gcgcggcggctgctggcgaacctggactcggccaaggatcgtccactgtggaaagtcatt gtcggtttgtcgatccggcacgtcgggccgaccgcggcgcaggcgctggcgcgggagttc ggctcgctggagctgatcgagcaggccaccgaggaacagctggccgacgtcgacggcgtg gggccgacgatcgcgcacgcggtgcaggagtggttcgaggtcgactggcaccgcgaggtg gtcgagaagtggcgccgggccggggtgcggatggaggaggagcgcgacacctccattccg cgcaacctcgaaggtctgtccattgtggtcaccggctcactggataccttctcgcgcgac gaggccaaggaggtcatcatggcccgcggcggcaaggcggcgggctcggtgtcgaagaag acggcctttgtggtggtcggggattcgccggggaccaagtacgacaaggcggtccagctg aaggtgccggtgctcgacgagaacggcttccgggtgctgctggaccgcgggccggaggcg gccgcggaggtcgcgctggtgcccgaggagcccgccgccgccgaagagtga

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