Amycolatopsis sp. YIM 10: YIM_21010
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Entry
YIM_21010 CDS
T06270
Symbol
ligA2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03030
DNA replication
amyy03410
Base excision repair
amyy03420
Nucleotide excision repair
amyy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YIM_21010 (ligA2)
03410 Base excision repair
YIM_21010 (ligA2)
03420 Nucleotide excision repair
YIM_21010 (ligA2)
03430 Mismatch repair
YIM_21010 (ligA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amyy03032
]
YIM_21010 (ligA2)
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_21010 (ligA2)
Enzymes [BR:
amyy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YIM_21010 (ligA2)
DNA replication proteins [BR:
amyy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YIM_21010 (ligA2)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YIM_21010 (ligA2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
YIM_21010 (ligA2)
MMR (mismatch excision repair)
DNA ligase
YIM_21010 (ligA2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YIM_21010 (ligA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH_2
BRCT
IclR_C
DNA_ligase_ZBD
HHH
RNA_ligase
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QFU89381
LinkDB
All DBs
Position
4324141..4326150
Genome browser
AA seq
669 aa
AA seq
DB search
MVTGKFWAVEARERIEELADRIVVLRDAYYRGSPEVADAEYDAIEDELRGLIAANPELAP
DPNPLDQVGAPAVLHAPIRHSRPMLSLDKATQPEQVAAFFDRFPGQPVVVMPKLDGLSLA
VVYEDGRLARAITRGDGTTGDDVTMLVRALTDGIPDRVDATGRVEVRGEAVMLRSTFAAY
NTAHPDKPLINPRNAAAGTLRAKDPATVAGRNLRFFAFDLYSDIAETDLGSALHALGFTA
AEMRRCANAEEAQEVIAEIERQRNELDYDLDGAVLRLADRDAYAAAGTRSASPRGALAYK
FAAEEKTTVLSDVVWDVGKTGKIAPVAWLEPVFVGGTTVSRATLANQEVIRARGIKIGDT
VLVRRAGDVIPFVAGVLDASKRTGAEREIVPPAECPSCAQPLTEQGNSRELFCTNVSCPA
QTVRRLIHWASRAAADIDAIGGVWIERLAEAGILEHPSDFYRLTKEQLLEFERIGEVSAT
RMIESIDASRRVGLRRALIGLAVPMASEGTAARLCRAGFPSLEAVADAGVDGLVAVEDIG
PKVAASLIEHLTRLRPELERLRERGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPR
SGEKVARPTFQRLCEKAGATIASSVSASTDLLITGAEVGAAKLTKAEKHGVEVVDQGEIW
QQLIAAGVV
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
gtggtcacgggtaagttctgggccgtggaagcacgggagcgcatcgaagaactcgctgat
cggatcgtcgtgctgcgcgacgcctactaccggggttcgccggaggtggcggacgcggag
tacgacgcgatcgaggacgagctgcgcgggctgatcgcggcgaacccggaactggcgccc
gacccgaacccgctggaccaggtgggcgcgcccgcggtgctgcacgcgccgatccggcac
tcccgcccgatgctctcgctggacaaggcgacccagcccgagcaggtcgccgccttcttc
gaccgctttcccgggcagccggtggtggtcatgccgaagctggacgggctgtcgctggcc
gtggtctacgaggacgggcggctggccagggcgatcacccgcggtgacggcaccaccggc
gacgacgtgaccatgctggtacgggcgctgaccgacggcatcccggaccgggtcgacgcg
accggccgggtcgaggtgcgcggcgaggcggtcatgctgcgctccaccttcgccgcctac
aacaccgcgcacccggacaagccgctgatcaacccgcgcaacgccgccgcgggcacgctg
cgcgccaaggacccggccaccgtcgccgggcggaacctgcgctttttcgccttcgacctg
tactccgacatcgcggagaccgacctgggcagcgcgctgcacgcgctcggcttcaccgcc
gccgagatgcgccgctgcgcgaacgcggaggaggcgcaggaggtgatcgccgagatcgag
cggcagcgcaacgagctggactacgacctcgacggcgccgtgctgcggctggccgatcgt
gacgcctacgccgccgccggcacccggtcggcctcaccgcgtggtgcgctggcgtacaag
ttcgccgccgaggagaagacaaccgtgctgtccgatgtggtctgggacgtcggcaagacc
ggcaagatcgccccggtcgcctggctggagccggtttttgtcggtggcaccacggtcagc
cgggcgacgctggccaaccaggaggtcatccgcgcccgcggcatcaagatcggcgacacg
gtgctggtgcgccgcgccggtgacgtgatcccgttcgtggccggggttctcgacgcctcg
aagcgcaccggcgccgagcgggagatcgtgccgccggccgagtgcccgtcctgcgcgcag
ccgctgaccgaacagggcaacagccgggaactgttctgcaccaacgtttcctgcccggcg
cagacggtgcggcggctgatccactgggcctcacgcgcggccgcggacatcgacgccatc
ggcggggtgtggatcgagcggctggccgaggccggcattctcgagcacccgtcggacttc
taccggctgaccaaggagcagctgctggaattcgagcgcatcggcgaggtctcggccacc
cgcatgatcgagtcgatcgacgcgagccgccgggtcgggctgcggcgggcgctgatcggc
ctggccgtcccgatggcctcggagggcacggccgcgcggttgtgccgggcgggttttccc
tcgctggaagcggtggccgacgccggtgtcgatggactggtcgcggtcgaggacatcggg
ccgaaggtcgccgcgtcgctgatcgagcacctgacccggctgcgcccggagttggagcgg
ctgcgcgagcgcggggtctccctggacgtgcgcgaggaggacctgccgccggtggtggcg
gccggtgcgccgctggccgggaagacggtggtggtcaccggcgcgatcagcgacccgcgc
tccggtgagaaggtcgcgcgcccgacgttccagcggttgtgcgagaaggcgggcgcgacc
atcgcgtcctcggtctcggcgagcacggacctgctgatcaccggtgccgaggtcggggcc
gccaagctcaccaaggccgagaagcacggcgtcgaagtcgtcgaccagggcgagatctgg
caacaactgatcgcggctggggtggtctag
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integrated database retrieval system
