Amycolatopsis sp. YIM 10: YIM_36535
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Entry
YIM_36535 CDS
T06270
Symbol
vanB
Name
(GenBank) Vancomycin B-type resistance protein VanB
KO
K15739
D-alanine---(R)-lactate ligase [EC:
6.1.2.1
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy01502
Vancomycin resistance
amyy02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
YIM_36535 (vanB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
YIM_36535 (vanB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
amyy01504
]
YIM_36535 (vanB)
Enzymes [BR:
amyy01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.2 acid-alcohol ligases (ester synthases)
6.1.2.1 D-alanine---(R)-lactate ligase
YIM_36535 (vanB)
Antimicrobial resistance genes [BR:
amyy01504
]
Gene sets
Vancomycin resistance modules
Vancomycin resistance, D-Ala-D-Lac type [MD:
M00651
]
YIM_36535 (vanB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp
ATP-grasp_4
ATP-grasp_3
CPSase_L_D2
ATPgrasp_ST
Motif
Other DBs
NCBI-ProteinID:
QFU92466
LinkDB
All DBs
Position
7702773..7703801
Genome browser
AA seq
342 aa
AA seq
DB search
MRIGIVFGGISEEHPVSVKSAREVAKHLDADKYEPFWIGITTSGTWLLCDSPDAGWEGTG
RPVVLSPDRGVQGLLVLDQGKFDTIGLDVVLPVLHGKLGEDGAMQGLLELSGIPYVGCDV
QSSAVCMDKSLAYVVTAGAGIPTPNFWIVPAEGNIDPGVLTYPVFVKPARSGSSFGVSKV
SREEELPAAVETARQYDSKVLIEEAVVGSEVGCAILGNELELIAGEVDQISLSHGFFKIH
QESNPESGSENSTITVPADLPAETRSLVQETAKDIYRALGCSGLARVDMFLTEDGTVMLN
EVNTFPGMTSYSRYPRMMAAAGMPFTEMIDRMVTLTLTGKLQ
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgagaatcggaattgttttcggggggatttccgaggagcaccccgtctccgtcaagtcc
gcgcgggaggtcgccaagcacctcgacgccgacaagtacgaaccgttctggatcgggatc
acgacgagcggcacctggctgctctgcgacagccccgacgcgggctgggagggaaccggc
cgcccggtcgtgctgtcaccggaccgcggtgtccagggattgctcgtcctggaccagggg
aagttcgacacgatcggcctggacgtcgtgctgcccgtcctgcacggcaagctcggcgag
gacggtgcgatgcagggcctgctggaactctccggcatcccctacgtcggctgcgacgtc
cagagttccgcggtgtgcatggacaagtcactcgcttacgtcgtcaccgccggcgcggga
atcccgacgccgaacttctggatcgtcccggcggaggggaacatcgatcccggcgtgctc
acctatcccgtttttgtcaagccggcccggtcgggttcgtcgttcggcgtcagcaaggtg
tcccgcgaagaggaactgccggccgcggtggagaccgcacggcagtacgactcgaaggtg
ctgatcgaagaggccgtcgtcggcagcgaggtcgggtgcgccatcctggggaacgagctg
gagctgatcgccggtgaggtggaccagatctcgctgtcccacgggttcttcaagatccac
caggagagcaatccggaaagcggctcggagaactcgacgatcaccgttccggcggacctt
ccggccgagacccgatcgctcgtccaggagacggcgaaggacatctaccgggcactgggg
tgctcggggctggcacgggtggacatgttcctgaccgaggacggcacggtgatgctcaac
gaggtcaacacctttcccgggatgacctcctacagccgttatccgaggatgatggcggct
gccggaatgccgttcaccgaaatgatcgaccggatggtcacgctgacgttgacggggaaa
ctccaatga
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