Amycolatopsis sp. YIM 10: YIM_39105
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Entry
YIM_39105 CDS
T06270
Symbol
gdh
Name
(GenBank) NAD-specific glutamate dehydrogenase
KO
K15371
glutamate dehydrogenase [EC:
1.4.1.2
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy00220
Arginine biosynthesis
amyy00250
Alanine, aspartate and glutamate metabolism
amyy00430
Taurine and hypotaurine metabolism
amyy00910
Nitrogen metabolism
amyy01100
Metabolic pathways
amyy01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09100 Metabolism
09102 Energy metabolism
00910 Nitrogen metabolism
YIM_39105 (gdh)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
YIM_39105 (gdh)
00220 Arginine biosynthesis
YIM_39105 (gdh)
09106 Metabolism of other amino acids
00430 Taurine and hypotaurine metabolism
YIM_39105 (gdh)
Enzymes [BR:
amyy01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.1 With NAD+ or NADP+ as acceptor
1.4.1.2 glutamate dehydrogenase
YIM_39105 (gdh)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_GDH_CD
GDH_C
GDH_ACT1
GDH_ACT2
GDH_HM3
GDH_ACT3
GDH_HM1
GDH_HM2
Motif
Other DBs
NCBI-ProteinID:
QFU92974
UniProt:
A0A5P9PXQ8
LinkDB
All DBs
Position
complement(8224985..8229991)
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AA seq
1668 aa
AA seq
DB search
MSSTASSISVGGASNPPGAGSTTLDRSERASQRRSASPEQIRDELVDAAAALAPDIEDLI
RLYFRHTPAEEIVDDEAADLVGAVRTHLQLAQERVPGRPVVRLLNPTTAEDGWTREATVV
QLVTDDMPYLVDSVAAELARTGVQVQRIVHPIVVVSREITGELREVHAGADVAEPPEGAA
AESWMYLEIDCITDPQRARELDNRLTSVLGDVREVVEDADKMAEAALSLAAGLENEPPSL
PAAEVREGAELLRWLADGHFTFLGYRQYELVEATTVEGDEPALRAVLASGLGVLRQDSLA
ARSLTAGPDSVAVALEPSLLVLTQASAPSTVHRPIYPYYVGVKTFDNKGRVTGEHRFLGM
FTTTALHENVLDIPVVASRVREVIHRAGFPMESYSGQRMLEVLQNWPRADLFSADVDSLY
ATATGAITLADRRRLRVFLRRDPYGRFYSCLVFLPRDRYSTRSRVAMQEVLLDELDGTHL
EFSTRVGETLLAQVHFTVHTDQGARTEPDTLRIQERLNDAVRSWDDLMVEAILAERRTRD
SEAGPGGEESAAEQGQRFASVFPEAYKEDYSAEEALADLHRLASLSGPDDLAMSFYLPDD
AEPGERRFKLYLLGQGVTLSTVLPLLQRMGVEVVDERPYELNREDGSRSWIYDFGLRMDQ
RALDEISEDQVEDLRTRFQDAFAAAWKGECEVDGFNALVLRAGLTWRQAAVLRAYSRYLR
QAGSPYSQEYIENAVLAHTDIATALVSLFETRFDLGIDPEQREQEAAAKAAEIANLIDDV
VSLDEDRILRRLMAVIGATLRTNYHVKSADGVPRPYLALKLDPQGVPDLPEPRPKFEVFV
YSPRVEGVHLRFGSVARGGLRWSDRREDFRTEILGLVKAQAVKNAVIVPVGAKGGFVVKR
PPAATGDAGIDRDAQLNEGIACYRMFISGLLDLTDNLNEGKTVPAPDVVRYDGDDSYLVV
AADKGTAKFSDIANEVAISYGFWLGDAFASGGSVGYDHKAMGITAKGAWESVKRHFRELG
VDTQSEEFTVVGIGDMAGDVFGNGMLLSEHIRLVAAFNHLHIFLDPNPDAASSYAERRRL
FDLPRSSWEDYDRSLISAGGGIYSRAAKTIPITPQVREVLGLDEGVQKLAPADLMRAILL
APVDLLWNGGIGTYVKAETESHADAGDKANDALRVNGQDLRVKVVGEGGNLGLTQLGRIE
FARAGGKINTDALDNSAGVDCSDHEVNIKILLDQQVAAGSLQREQRNQLLLEMTDEVGEL
VLADNYRQNAVLGVSRAHRAPMVSVHARLIADLEADGKLDRKLEALPSPAEFKRLEKEEK
GLTSPELATVLAHVKLDLKDELLASELPDNEVFARRLPDYFPKPLRERFGDAIADHPLHR
QIITTLLVNEVVDGAGLSYAFRLNEEMNATATDAVRAYAVVTSVYDLPSLWREIDALDNL
VPSDVADEMMLETRRLLDRAARWFLTNRPQPLAVGAEINRFGETVAQLATQVEGFLRGRE
AESVREDVERLTAHGVPESVARRVAALLHTYGLLDVTEVAELAEQEVGIDVERSTAEAAE
LYYALSEHLNVDKMLTSISALERGNRWHALARLALRDDLYASLRAITLDALRHSDSDDTA
DQKIEQWEHTNASRLARARVSLDEIQRSGRLDLATLSVAARQMRSTVR
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgacggcgtcttcgatcagcgttggcggggcctccaacccgcccggagcgggc
agcaccacgctggaccgctccgagcgcgcgagccagcggcgctcggccagccccgagcag
atccgggacgagctcgtcgacgcggccgccgcgctcgcgccggacatcgaggacctgatc
cggctgtacttccggcacacccccgccgaagaaatcgtcgacgacgaggcggcggacctg
gtcggcgcggtgcggacccacctccagctcgcgcaggagcgcgtgccggggcgcccggtg
gtccggctgctcaacccgaccaccgccgaggacggctggacccgcgaagcgaccgtggtc
cagctggtcaccgacgacatgccgtacctggtcgactccgtggccgccgagctggcgcgc
accggggtgcaggtgcagcgcatcgtgcaccccatcgtggtggtcagccgggagatcacc
ggcgagctgcgcgaggtgcacgcgggcgccgacgtggccgagccgccggagggcgccgcc
gcggaatcctggatgtacctggagatcgactgcatcaccgacccgcagcgcgcccgcgag
ctggacaaccggctgacctcggtgctcggtgacgtgcgtgaggtcgtcgaggacgccgac
aagatggccgaggccgcgctgtcgctggccgccgggctggagaacgagccgccgtcgctg
cccgccgccgaggtgcgcgagggcgcggagctgctgcgctggctggccgacgggcatttc
accttcctcggctaccggcagtacgagctggtcgaggcgaccaccgtcgaaggcgacgag
cccgcgttgcgcgcggtgctggcctccgggctgggcgtgctgcgccaggacagcctcgcg
gcgagaagcctgacggccgggccggattcggtcgcggtcgcgctggagccgtcgctgctg
gtgctcacccaggccagcgcgccctcgaccgtgcaccgcccgatctacccgtactacgtc
ggcgtcaagaccttcgacaacaagggccgcgtcaccggcgagcaccggttcctcggcatg
ttcaccaccaccgccctgcacgagaacgtgctggacatcccggtggtcgcgagccgcgtg
cgcgaggtgatccaccgcgccggattcccgatggagtcctactccgggcagcgcatgctc
gaggtgctgcagaactggccgcgcgcggacctgttctccgccgacgtcgactccctctac
gcgaccgcgaccggcgcgatcaccctggccgaccggcggcgtctgcgggtgttcctgcgc
cgcgacccgtacggccgtttctattcgtgcctggtcttcctgccgcgcgatcgctacagc
acccgctcgcgcgtcgcgatgcaggaggtcctgctcgacgaactcgacggcacgcacctc
gagttcagcacgcgcgtcggtgagacgttgctggcccaggtgcacttcaccgtgcacacc
gaccagggcgcgcggaccgagccggacaccctgcgcatccaggaacgcctgaacgacgcc
gtgcgcagctgggacgacctcatggtcgaggcgatcctggccgagcgccgcacgcgcgac
agcgaagcgggcccaggcggcgaggagtcggccgccgagcagggccagcggttcgcctcg
gtgttccccgaggcctacaaggaggactactccgccgaagaggcgctggccgacctgcac
cgtctggcgtcgctgtccggtccggacgacctggcgatgtcgttctacctgcccgacgac
gccgagccgggggagcggcgcttcaagctgtacctgctcggccagggcgtgactctgtcg
accgtgctgccgctgctgcagcgcatgggcgtcgaggtggtcgatgagcggccgtacgag
ctgaaccgcgaggacggctcgcgctcgtggatctacgacttcggcctgcgcatggaccag
cgcgcgctcgacgagatcagcgaggaccaagtcgaagacctgcggacccgattccaggac
gcgttcgccgcggcctggaagggcgagtgcgaggtcgacggcttcaacgcgctggtgctg
cgcgccgggctgacctggcgccaggcggccgtgctgcgcgcctactcgcggtacctgcgc
caggcgggcagcccgtactcgcaggagtacatcgagaacgccgtgctcgcgcacaccgac
atcgcgaccgcgctggtcagcctcttcgagacccggttcgacctcggcatcgaccccgag
cagcgcgagcaggaggcggccgcgaaggccgccgagatcgcgaacctgatcgacgacgtg
gtcagcctcgacgaggaccggatcctgcgccggctgatggcggtcatcggggcgacgctg
cggacgaactaccacgtcaagtcggccgacggcgtgccgcggccgtacctggcgctcaag
ctggacccgcagggcgtgccggacctgccggagccgcggccgaagttcgaggtcttcgtc
tactcgccgcgcgtcgagggtgtgcacctgcgcttcggctcggtcgcgcgcggcgggttg
cgctggtccgaccgccgggaggacttccgcaccgagatcctgggcctggtcaaggcgcag
gcggtgaagaacgcggtgatcgtgccggtcggcgcgaagggcgggttcgtggtcaagcgg
ccgcccgccgcgaccggtgacgccgggatcgatcgcgacgcccagctcaacgagggcatc
gcctgctaccgcatgttcatctccggcctgctggacctgaccgacaacctcaacgagggc
aagaccgtgcccgcgccggacgtggtgcgctacgacggggacgacagctacctggtcgtc
gccgcggacaagggcaccgcgaagttctccgacatcgccaacgaggtggccatcagctac
ggcttctggctcggcgacgccttcgcctccggtggctcggtcggctacgaccacaaggcc
atgggcatcaccgcgaagggcgcgtgggagagcgtcaagcggcacttccgcgagctgggc
gtggacacccagagcgaggagttcaccgtcgtcggcatcggcgacatggccggggacgtg
ttcggcaacggcatgctgctctccgagcacatccggctggtggccgcgttcaaccacctg
cacatcttcctggacccgaacccggacgcggccagctcctacgccgagcgacgccgcctg
ttcgacctgccgcggtcctcgtgggaggactacgaccggtcgctgatcagcgccggtggc
ggcatctactcgcgggccgcgaagaccattccgatcaccccgcaggtgcgcgaggtgctc
ggcctcgacgaaggcgtgcagaagctggccccggccgacctgatgcgcgcgatcctgctc
gccccggtggacctgctgtggaacggcggcatcggcacctacgtcaaggccgagaccgaa
tcgcacgccgacgccggggacaaggccaacgacgcgctccgcgtcaacggccaggacctg
cgggtcaaggtggtcggcgagggcggcaacctcggcctgacccagctcggccggatcgag
ttcgccagggccggcggcaagatcaacaccgacgcgctggacaactcggccggggtggac
tgctccgaccacgaggtcaacatcaagatcctgctcgaccagcaggtcgcggccggcagc
ctgcagcgcgagcagcgcaaccagctgctgctggagatgaccgacgaggtcggtgagctg
gtgctcgcggacaactaccggcagaacgcggtgctcggcgtcagccgggcgcaccgggcg
ccgatggtctcggtgcatgccaggctgatcgccgatctggaggccgacggcaagctcgac
cgcaagctggaggcgctgcccagcccggcggagttcaagcggctcgagaaggaggagaag
ggcctcacctcgcccgagctggccaccgtgctcgcgcacgtgaagctcgacctcaaggac
gagctgctggccagcgagctgccggacaacgaggtgttcgccaggcgcctgcccgactac
ttcccgaagccgctgcgggagcgcttcggcgacgcgatcgccgaccacccgctgcaccgc
cagatcatcaccacgctgctggtcaacgaggtggtcgacggggcgggcctgtcgtatgcg
ttccggctcaacgaggagatgaacgcgaccgcgaccgacgccgtgcgcgcctacgcggtg
gtcacctcggtgtacgacctgccgtcgctgtggcgggagatcgacgcgctcgacaacctc
gtgccgtcggacgtcgccgacgagatgatgctggagacgcgccgcctgctcgaccgggcc
gcgcgctggttcctcaccaaccggccgcagccgctggccgtcggcgcggagatcaaccgc
ttcggcgagacggtggcccagctggccacccaggtcgagggcttcctgcgcgggcgtgaa
gcggagtcggtccgcgaggacgtcgagcggctgaccgcgcacggcgtgcccgagtcggtg
gccaggcgggtggcggcgctgctgcacacctacggcctgctggacgtcaccgaggtcgcc
gaactggccgagcaggaggtcggcatcgacgtggagcgcagcacggccgaggccgccgag
ctgtactacgcgctgtccgagcacctcaacgtggacaagatgctcacctcgatcagcgcg
ctggagcggggcaaccgctggcacgcgctggcgcggctggcgctgcgggacgacctgtac
gcgtcgctgcgggcgatcaccctggacgcgctgcggcacagcgactccgacgacaccgcg
gaccagaagatcgagcagtgggagcacaccaacgcctcgcgcctggcgcgggcgcgggtt
tcgctggacgagatccagcgctccggcaggctcgacctggcgacgctttcggtggcggcg
cggcagatgcggagcacggtccgctga
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