Amycolatopsis sp. CA-230715: HUW46_06798
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Entry
HUW46_06798 CDS
T10444
Symbol
ligA_1
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amyz Amycolatopsis sp. CA-230715
Pathway
amyz03030
DNA replication
amyz03410
Base excision repair
amyz03420
Nucleotide excision repair
amyz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amyz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HUW46_06798 (ligA_1)
03410 Base excision repair
HUW46_06798 (ligA_1)
03420 Nucleotide excision repair
HUW46_06798 (ligA_1)
03430 Mismatch repair
HUW46_06798 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amyz03032
]
HUW46_06798 (ligA_1)
03400 DNA repair and recombination proteins [BR:
amyz03400
]
HUW46_06798 (ligA_1)
Enzymes [BR:
amyz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HUW46_06798 (ligA_1)
DNA replication proteins [BR:
amyz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HUW46_06798 (ligA_1)
DNA repair and recombination proteins [BR:
amyz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HUW46_06798 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HUW46_06798 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
HUW46_06798 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HUW46_06798 (ligA_1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
DUF8259
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QWF83358
LinkDB
All DBs
Position
7180945..7183083
Genome browser
AA seq
712 aa
AA seq
DB search
MSELPQDPVSPEAAQDLGDVPAEARERHAALAEEIRGHQFRYYVLDSPTITDGEFDVLLR
ELEGLEEEHPGLRTPDSPTQKVGGTFSTEFTAYDHLERMLSLDNVFDPEELVTWVERVEK
EIGATRYLCELKIDGLAINLLYEDGRLTRALTRGDGRTGEDVTLNVRTLEQVPDRLTGTD
RFPVPALVEVRGEVFFRVQDFLDLNARMVEAGKPPYANPRNTAAGSLRQKDPKITKERRL
RLICHGLGRREGFEPERQSEAYDALAAWGLPVSPHSKVISSAELAEHVEYWGEHRHDAEH
EIDGVVVKVDQVALQRRLGSTSRAPRWAIAYKYPPEEATTTLLDIQVNVGRTGRVTPFAV
MEPVKVAGSTVAMATLHNAEEVKRKGVLIGDRVVIRKAGDVIPEVLGPVVDVRTGEEREF
LMPIRCPECDTPLAYQKEGDVDIRCPNARTCPAQLRERLFHLAGRGAFDIEVLGYEAAVA
LLESGVVADEGDIFDLDEEKLGEVELFRTKAGELSANAKKLLANLDSAKDRPLWKVIVGL
SIRHVGPTAAQALAREFGSLDRIEHATEEELADVDGVGPTIAHAAQEWFEVDWHREVVEK
WRAAGVRMAEERDDSIPRNLEGLSIVVTGSLETFSRDEAKEVIMARGGKAAGSVSKKTAF
VVVGEAPGSKYEKAVQLKVPVLDEAGFRVLLDEGPEAAAEVALPAEEPEADE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaactaccccaagacccggtctcccccgaagcagcacaggacctcggtgacgta
cccgccgaggcccgcgagcggcatgccgcgctcgccgaggagatcaggggccaccagttc
cggtactacgtgctggactcgccgacgatcaccgacggcgagttcgacgtgctgctgcgc
gagctggaggggctcgaggaggagcatcccggcctgcgcaccccggactcgccgacgcag
aaggtcgggggcaccttctccaccgagttcaccgcgtacgaccacctcgagcggatgctc
agccttgacaacgtgttcgaccccgaggagctggtcacctgggtcgagcgcgtcgagaag
gagatcggcgccacccggtacctgtgcgagctgaagatcgacgggctcgcgatcaacctg
ctctacgaggacggcaggctcacccgcgcgctgacccgcggcgacggccgcaccggcgag
gacgtcacgctcaacgtccgcacgctcgaacaggtcccggacaggctgaccggcaccgac
cggttcccggtgcccgcgctcgtcgaggtccgcggcgaggtgttcttccgggtgcaggac
ttcctcgacctcaacgcgcggatggtggaggcgggcaaaccgccgtacgccaacccgcgc
aacaccgcggcgggctcgctgcggcagaaggaccccaagatcaccaaggagcggcggctg
cggctgatctgccacgggctcggccgcagggagggcttcgagccggagcggcagtccgag
gcgtacgacgcgctggccgcgtgggggctgccggtttccccgcacagcaaggtgatctcg
tcggccgagctcgccgagcacgtcgagtactggggcgagcaccggcacgacgccgagcac
gagatcgacggcgtggtggtcaaggtcgaccaggtggccctgcagcgcaggctcggcagc
acctcgcgcgcgccgcggtgggcgatcgcctacaagtacccgccggaggaggccaccacc
acgttgctggacatccaggtcaacgtgggccgcaccggccgtgtcacgccgttcgcggtg
atggagccggtcaaggtggcgggctccacggtcgcgatggccacgctgcacaacgcggag
gaggtcaagcgcaagggcgtgctgatcggcgaccgcgtggtcatccgcaaggcgggcgac
gtcatccccgaggtgctcggcccggtcgtcgacgtccgcaccggcgaggagcgcgagttc
ctgatgccgatccgctgcccggagtgcgacacgccgctggcctaccagaaggaaggcgac
gtcgacatccgctgcccgaacgcgcggacctgcccggcgcagctgcgcgagcggctgttc
cacctcgccgggcgcggcgcgttcgacatcgaggtgctcggctacgaggccgccgtcgcg
ctgctggagtccggtgtggtcgccgacgagggtgacatcttcgacctcgacgaggagaag
ctgggcgaggtagagctgttccgcaccaaggcgggcgagctgtcggccaatgcgaagaag
ctgctggcgaacctggactcggccaaggaccgtccactgtggaaggtgatcgtcgggctg
tcgatccggcacgtcgggcccaccgcggcgcaggcgctggcccgcgagttcggctcgctc
gaccgcatcgagcacgcgacggaggaggaactggccgacgtcgacggggtgggaccgacg
atcgcgcacgccgcgcaggagtggttcgaggtcgactggcaccgcgaggtggtcgagaag
tggcgggccgccggggtgcggatggcggaggagcgcgacgactcgatcccgcgcaacctc
gaaggtctgtccattgtggtcaccggctcgctggagacgttctcgcgcgacgaggccaag
gaggtcatcatggcccgcggcgggaaagcggcgggttcggtgtcgaagaagaccgcgttc
gtggtggtcggggaagcaccggggagcaagtacgagaaggccgtccagctgaaggtgccg
gtgctcgacgaagccggtttccgcgtgctgctcgacgaaggccccgaggccgcggcggaa
gtggcgctgcctgccgaagagcccgaggccgatgagtga
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