Amycolatopsis mediterranei RB: B737_1658
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Entry
B737_1658 CDS
T02804
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amz
Amycolatopsis mediterranei RB
Pathway
amz03030
DNA replication
amz03410
Base excision repair
amz03420
Nucleotide excision repair
amz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B737_1658 (ligA)
03410 Base excision repair
B737_1658 (ligA)
03420 Nucleotide excision repair
B737_1658 (ligA)
03430 Mismatch repair
B737_1658 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amz03032
]
B737_1658 (ligA)
03400 DNA repair and recombination proteins [BR:
amz03400
]
B737_1658 (ligA)
Enzymes [BR:
amz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B737_1658 (ligA)
DNA replication proteins [BR:
amz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B737_1658 (ligA)
DNA repair and recombination proteins [BR:
amz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B737_1658 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B737_1658 (ligA)
MMR (mismatch excision repair)
DNA ligase
B737_1658 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B737_1658 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AGT82322
LinkDB
All DBs
Position
1789780..1791960
Genome browser
AA seq
726 aa
AA seq
DB search
MSSTELPQDQVAAVDAEVAVEDITDVPADVRERHSALAEELRDHQFRYYVLDSPIISDGQ
FDELLGELQRLEDAHPALVTPESPTQRVGGTFSTEFTAHDHLERMLSLDNVFAEDEFLAW
VERVEKEVGRTEFLAELKIDGLAINLLYENGHLTRALTRGDGRTGEDVTLNVRTLDQVPQ
TLTGTDQFPVPALVEVRGEVFFRVEDFLELNAKMVEAGKPPYANPRNTAAGSLRQKDPKI
TRERRLRLICHGLGKRAGFEPQRQSEAYDALAAWGLPVSPHSKVLTSADELTAHIAYWGE
HRHDAEHEIDGVVIKVDQVALQRRLGTTSRAPRWAIAYKYPPEEAITTLLDIQVGVGRTG
RVTPFAVTEPVTVAGSTVSRATLHNQEEVKRKGVLIGDRIVIRKAGDVIPEVLGPVVDAR
TGDEREFVMPTHCPECGTELAYQKEGDKDIRCPNTRFCPAQLRERLFHLAGRGAFDIEVL
GYEAAVALLDARVVADEGDVFDLNEDSLAEVELFRTKAGELSANARKLLSNLDAAKDRPL
WKVLVALSIRHVGPTAAQALAREFGSIERIEQATEEELSAVDGVGPTIAHATQEWFDVAW
HREIVEKWRRAGVRMEEARDESIPRHLEGLSIVVTGSLDGFSRDEAKEVVMARGGKAAGS
VSKKTAFVVVGDSPGSKYDKAVQLKVPVLDEAGFRVLLEQGPDAAREVALPAGEETAEQE
TGGTDG
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcaccgagcttccccaggaccaggttgcggcggtcgacgccgaggtggccgtg
gaggacatcaccgatgtcccggccgacgttcgagagcggcacagcgccctggccgaggaa
ctgcgtgaccaccagttccgctactacgtcctggactcgccgatcatctccgacgggcag
ttcgacgagctgctgggcgaactgcagcggctcgaggatgcgcacccggcgctggtgaca
cccgaatcgccgactcagcgggtcggcggcacgttctcgaccgagttcaccgcgcacgac
cacctcgagcgcatgctcagcctggacaacgtgttcgccgaggacgagttcctggcctgg
gtcgaacgcgtcgagaaggaggtggggcgcacagaattcctcgccgagctgaagatcgac
ggcctggcgatcaacctcctgtacgaaaacggccacctgacccgggccctcacgcgaggc
gacggccggaccggtgaggacgtcacgctcaacgtccgcacgctcgaccaggtgccgcag
acgctgaccggcaccgatcagttcccggtgcccgccctggtcgaggtgcgcggcgaggtc
ttcttccgcgtcgaggacttcctcgagctgaacgcgaagatggtcgaagccggcaaaccg
ccgtatgcgaacccgcgcaacaccgcggccggctcgctgcggcagaaggatcccaagatc
actcgcgagcgccggctgcggctcatctgccacggactcggtaaacgcgccggcttcgag
cctcagcgccaatcggaggcctacgacgcgctggccgcgtgggggctgccggtgtcgcca
cacagcaaggtcctgacttcggctgacgagctgaccgcgcacatcgcctactggggcgag
caccggcacgacgccgagcacgagatcgacggcgtggtcatcaaggtcgaccaggtggcg
ttgcagcggcggctgggcacgacgtcgcgcgccccgcggtgggcgatcgcgtacaagtac
ccgccggaagaggcgatcacgacgctgctggacatccaggtcggcgtcgggcgaaccggg
cgcgtgaccccgttcgcggtcaccgagccggtcacggtcgcggggtcgaccgtctcgcgc
gccaccctccacaaccaggaggaggtcaagcgcaagggcgtgctgatcggcgaccggatc
gtcatccgcaaggccggcgacgtcattcccgaggtcctcggtccggtcgtggacgcgcgc
acgggcgacgagcgcgagttcgtcatgcccacccactgcccggaatgcggcacggagctc
gcctaccagaaggaaggcgacaaggacatccggtgcccgaacacccggttctgccccgcg
cagctgcgggagcgcctgttccacctggccggacgcggcgccttcgacatcgaggtcctc
gggtacgaggctgcggtcgcgctgctcgacgcgcgggtggtcgccgatgagggcgacgtc
ttcgacctgaacgaggacagcctcgccgaggtcgagctgttccggaccaaggcaggggag
ctgtcggcgaacgcgcggaagctgctctccaacctcgacgcggccaaggaccggccgttg
tggaaggtgctggtcgctttgtcgatccggcacgtcgggccgacagcggcgcaggcgctg
gcccgtgagttcggctcgatcgaacgaatcgagcaggccaccgaggaggaactttcggca
gtcgacggcgtcggcccgaccatcgcccacgcgacgcaggagtggttcgacgtcgcctgg
caccgggagatcgtcgaaaagtggcgacgcgccggcgtgcggatggaggaggcgcgcgac
gagtcgatccctcgccacctcgaggggctgtcgatcgtggtcacgggttcgctcgacggc
ttctcgcgcgacgaggccaaggaagtcgtcatggcccgcggtggcaaggctgccgggtcg
gtctcgaagaagaccgccttcgtcgtcgtcggggactcgcctggttcgaaatacgacaag
gccgttcagctcaaggtgccggtgctcgacgaagccggcttccgcgtcctgctggagcag
ggccccgacgcggcgcgggaggtggcgctgccggccggcgaggagaccgccgagcaagag
accgggggaacggatgggtga
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