Amycolatopsis mediterranei RB: B737_3137
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Entry
B737_3137 CDS
T02804
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
amz
Amycolatopsis mediterranei RB
Pathway
amz03030
DNA replication
amz03410
Base excision repair
amz03420
Nucleotide excision repair
amz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B737_3137 (ligA)
03410 Base excision repair
B737_3137 (ligA)
03420 Nucleotide excision repair
B737_3137 (ligA)
03430 Mismatch repair
B737_3137 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amz03032
]
B737_3137 (ligA)
03400 DNA repair and recombination proteins [BR:
amz03400
]
B737_3137 (ligA)
Enzymes [BR:
amz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B737_3137 (ligA)
DNA replication proteins [BR:
amz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B737_3137 (ligA)
DNA repair and recombination proteins [BR:
amz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B737_3137 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B737_3137 (ligA)
MMR (mismatch excision repair)
DNA ligase
B737_3137 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B737_3137 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
DNA_ligase_ZBD
RNA_ligase
HHH
IclR_C
Nlig-Ia
RUBY_RBDX
PTCB-BRCT
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AGT83801
LinkDB
All DBs
Position
complement(3432686..3434677)
Genome browser
AA seq
663 aa
AA seq
DB search
MNAQERIPELADRITVLRDAYYRGSPLVADAEYDAVEDELRSLIEAHPEFTPDPNPLDQV
GAPAVLHAPIRHSRPMLSLEKATKPEQVEAFFDRFPGQPVVVMPKLDGLSLAVVYENGRL
ARAVTRGDGTTGDDVTKLVRALTDGIPEQVEAPGRVEVRGEAVMLRSTFAAYNTAHPDKP
LINPRNAAAGTLRAKDPATVAERRLRFFAFDLYTEPDSAETDLGSALHTLGFTAADMRRC
ADAAEAQSVIGEIEQQRNELDYDLDGAVLRLASRDAYAAAGTRSSSPRGALAFKFAAEEK
TTVLSDVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQEVIRARGIKIGDTVLVRRA
GDVIPFVAGVLDASKRTGAEREIVPPEVCPSCGQPLTEQGNSRELFCTNVSCPAQTVRRL
IHWASRAAADIDAIGGVWIERLAEAGILENPSDFYGLTKEKLLEFDRIGEVSATRMIESI
DASRGVGLRRALIGLAIPMASEGTAARLCRAGFGSLEDVAEAGVDGLVAVEDIGPKVAAS
LIEHLTRLRPELERLRKAGVSLDVREEDLPPVVAAGAPLAGKTVVVTGAISDPRSGEKVP
RPTFQRLCERAGATTATSVSASTDLLITGADVGASKLTKAEKHGVEVVDQGEIWQQLISA
GIV
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgctcaggaacgcatcccggaactcgccgaccgcatcacggtgctgcgtgacgcc
tactaccggggatcgccgctggtggccgacgcggagtacgacgcggtcgaagacgagctg
cggagcctgatcgaggcccacccggaattcacgcccgacccgaaccccctcgaccaggtc
ggcgcacccgcggtgctgcacgcgccgatccggcactcgcgcccgatgctgtcactggaa
aaggcgaccaaacccgagcaggtcgaggcgttcttcgaccgcttccccggccagccggtg
gtcgtgatgccgaagctcgacggcctgtcgctggccgtcgtctacgaaaacgggcggctg
gcccgcgcggtcacccgcggcgacggcacgaccggcgacgacgtcacgaagctcgtgcgc
gccctgaccgacgggatccccgagcaggtcgaggcgccgggccgcgtcgaggtccgcggc
gaggccgtcatgctgcgctccaccttcgccgcctacaacaccgcccacccggacaagccg
ctgatcaacccgcgcaacgccgccgccggcacgctgcgcgcaaaggaccccgcgacggtg
gccgagcgccggctgcggttcttcgccttcgacctgtacaccgagcccgacagcgcggag
accgacctcggcagcgcgctgcacacgctcggcttcaccgcggccgacatgcggcggtgc
gccgacgccgccgaggcgcagagcgtgatcggcgagatcgagcagcagcgcaacgaactg
gactacgacctcgacggtgccgtgctgcggctggcgagccgcgacgcctacgcggcggcc
ggcacccggtcgagctcaccccgcggggcgctggcgttcaagttcgccgccgaggagaag
accaccgtgctgtccgatgtggtctgggacgtcggcaagaccggcaagatcgccccggtc
gcctggctggaaccggtgttcgtgggcgggaccacggtcactcgcgcgaccctggccaac
caggaggtcatccgcgcccgcggcatcaagatcggcgacaccgtgctggtgcgccgcgcg
ggcgacgtgatcccgttcgtcgccggcgtgctcgacgcctcgaagcgcacgggcgccgag
cgggagatcgtcccgccggaggtgtgcccgtcgtgcgggcagccgctgaccgagcagggc
aacagccgggaactgttctgcaccaacgtgtcctgtccggcgcagaccgtgcggcggctg
atccactgggcgtcgcgggcggcggcggacatcgacgccatcggcggcgtgtggatcgaa
cggctggccgaggcgggcatcctggagaatccctcggacttctacgggctgacgaaggaa
aagctgctcgagttcgaccgcatcggcgaggtttcggccacccggatgatcgagtcgatc
gacgcgagccggggggtcggcctgcgccgggcgctgatcgggctggccatcccgatggcg
tccgaaggcacggccgcccgcctgtgccgggccgggttcggctccctggaagacgtcgcg
gaggcgggcgtcgacgggctcgtggcggtggaggacatcgggccgaaggtcgccgcgtcg
ctgatcgagcacctcacccggctgcgccccgagctcgaacgcctgcggaaggcgggggtt
tcgctggacgtgcgcgaggaggacctcccgccggtcgtcgcggcgggcgcgccgctggcg
ggcaagacggtggtggtcaccggcgcgatcagcgacccccggtcgggcgagaaggtgccg
cgcccgacgttccagcggctctgcgagagagcgggcgcgaccacggcgacctcggtttcg
gcgagcacggacctgctcatcaccggcgccgacgtcggggcaagcaagctgacgaaggcc
gagaagcacggcgtcgaggtcgtcgaccagggcgagatctggcagcagctgatctcggcg
ggcatcgtgtga
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integrated database retrieval system
