Anabaena sp. 90: ANA_C12819
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Entry
ANA_C12819 CDS
T02341
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
anb
Anabaena sp. 90
Pathway
anb03030
DNA replication
anb03410
Base excision repair
anb03420
Nucleotide excision repair
anb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
anb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ANA_C12819 (ligA)
03410 Base excision repair
ANA_C12819 (ligA)
03420 Nucleotide excision repair
ANA_C12819 (ligA)
03430 Mismatch repair
ANA_C12819 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
anb03032
]
ANA_C12819 (ligA)
03400 DNA repair and recombination proteins [BR:
anb03400
]
ANA_C12819 (ligA)
Enzymes [BR:
anb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ANA_C12819 (ligA)
DNA replication proteins [BR:
anb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ANA_C12819 (ligA)
DNA repair and recombination proteins [BR:
anb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ANA_C12819 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ANA_C12819 (ligA)
MMR (mismatch excision repair)
DNA ligase
ANA_C12819 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ANA_C12819 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
RCDG1
Motif
Other DBs
NCBI-ProteinID:
AFW95525
UniProt:
K7VZ42
LinkDB
All DBs
Position
chANA01:3183189..3185234
Genome browser
AA seq
681 aa
AA seq
DB search
MMSTQPETKRIEELRCLLQKAGYAYYVLDAPIMEDTVYDRLYRELQELETNNPELITADS
PTQRVGERPAAHFTSVRHNIPLYSLENAFNIEELQNWDQRWRRHSPTQYNDGEIEYVSEL
KIDGAALALTYENGVLVRGTTRGDGVMGEEITQNVRTIRSIPLRLNFDGLENIAKVEVRG
EVFLPLQVFKEINQKRQKAGEQIFANPRNAVAGTLRQLDSRIVAQRQLDFFAYTLHITGL
DDSSIANTQWEALELLQRLGFRVDTNHKLCHSIAEVVEYYQYWDTERLNSPYMTDGVVVK
LNTFRLQEQLGFTQKFPRWAIALKYPAEEAPTRVEKITVNVGRTGALTPLAEMLPVQLAG
TTVSRATLHNSDRIEQLDIRIGDTVIVRKAGEIIPEVVRVIKELRPVNTQPFIMPSHCPA
CGQLVVRETGEAVTRCINASCPAILKGEIEHWVSRDALDIKGVGEKLVYQLVDKSLVHSV
ADLYDLQIEDLCALERMGKKSAEKLINAIAQSKTQPWARVLYGLGIRHVGSVNAQLLTEK
FTTVEDLTAARQSDIAGVYGIGAEIAQSVYQWFRTPANQTLISRIQAIGLELANSTAAQS
VGEINQKFAGKTFVVTGTLPTLKRDEAKALIQKSGGKITDSISRKTDFLVVGADAGSKLE
KARKLEISQLTEAQLLAMLTE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcaactcaacctgaaaccaaacgtatagaagaactacgatgtttgctacaaaaa
gcaggctacgcttattatgttttagatgcgccaattatggaagatacggtttatgatcgg
ctgtatcgagagttgcaagaattagaaactaacaatcccgaattaattactgctgatagt
ccgactcagcgcgtcggtgaaagacctgctgcccattttacctcagtccgtcataatatc
cccctgtacagcctggaaaatgcgtttaatattgaagaattgcaaaattgggatcaacgg
tggcggcgacactcaccaactcagtataatgacggagaaatagaatatgtatctgagttg
aaaattgatggtgctgctttagcattaacttacgaaaatggagttttagtcagggggaca
acgagaggagatggggtaatgggtgaagagattacccaaaatgtgagaactattcgctca
attcccctgcgtttgaattttgacggtttagaaaatattgctaaagtggaagtacgggga
gaagtgtttctacctttacaggtgtttaaagaaattaatcagaaaagacaaaaagccggt
gaacaaatatttgctaacccgcgcaatgctgtagcaggtacgctcagacaattagattct
cgcattgtcgcacaacgacagttagatttctttgcttatactttgcatattaccgggttg
gatgattccagtattgccaatacccaatgggaagctttggaattattgcaaagacttggt
tttcgagttgataccaaccataaactctgccattctattgctgaagttgttgaatattac
caatattgggatacagaacggctgaattctccctatatgacagatggtgttgtcgtcaaa
ttaaatacttttagactgcaagaacaattggggtttacacagaagtttccccgctgggct
atagccttaaaatatcccgccgaagaagcccccacccgtgtagaaaaaatcactgttaac
gttggcagaaccggggcattaactcccttagcggaaatgttgcccgtacaattagcgggg
acaacagtttcccgtgctaccttacataatagcgatcgcattgaacaattagacatccgt
attggcgacaccgtgattgttcgcaaagccggggaaatcattcccgaagtagtccgggta
atcaaagaactacgtcccgttaatacccaacctttcattatgccttcccattgtccagcc
tgtggacagctagtagtcagggaaactggagaagcagttactagatgtataaatgcttcc
tgtcccgccattctcaagggtgaaattgaacattgggtcagtcgtgacgcgttagatatt
aaaggtgtcggggaaaagctagtgtatcaacttgtagataaaagcttagtccattccgtg
gctgatttatatgacttgcaaatagaagacttgtgtgcattagaacgcatgggaaaaaaa
tcggcggaaaaattgatcaatgcgatcgcccaatcaaaaacgcaaccctgggctagagta
ttatatggtttaggcatccgtcacgttggcagcgtcaacgcccaattattaacagagaag
tttaccaccgtcgaagacttaacagccgccagacaatcggatattgcaggtgtttatggt
atcggtgcagaaatcgcccaatcagtctatcaatggtttcgtactccagccaatcaaacc
ttaatatcccgtatccaggctattggtttagaattagcaaacagcacagcagcccagtct
gtgggcgaaattaatcaaaaatttgctggtaaaacctttgttgttactggcacattacca
actttaaaacgcgatgaagccaaagctttaattcaaaaatcaggcggtaaaattactgat
tcaattagcagaaaaacagactttttagttgtaggtgcagatgccggttctaagttagag
aaagcgcggaagttggaaattagccaattgactgaggcgcaattattggcaatgctgaca
gaatag
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