Aminobacter niigataensis: AMD1_2716
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Entry
AMD1_2716 CDS
T09606
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
anj
Aminobacter niigataensis
Pathway
anj03030
DNA replication
anj03410
Base excision repair
anj03420
Nucleotide excision repair
anj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
anj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMD1_2716 (ligA)
03410 Base excision repair
AMD1_2716 (ligA)
03420 Nucleotide excision repair
AMD1_2716 (ligA)
03430 Mismatch repair
AMD1_2716 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
anj03032
]
AMD1_2716 (ligA)
03400 DNA repair and recombination proteins [BR:
anj03400
]
AMD1_2716 (ligA)
Enzymes [BR:
anj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AMD1_2716 (ligA)
DNA replication proteins [BR:
anj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMD1_2716 (ligA)
DNA repair and recombination proteins [BR:
anj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AMD1_2716 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMD1_2716 (ligA)
MMR (mismatch excision repair)
DNA ligase
AMD1_2716 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AMD1_2716 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CAI2933990
LinkDB
All DBs
Position
AMD1:2610839..2612992
Genome browser
AA seq
717 aa
AA seq
DB search
MSEKSVDSLSEAEAAAELARLTEEIAGHDLRYHADDAPTISDADYDALRRRNLAIEQRFP
QLVREDSPSKSVGAAVSEKFGKVAHVVPMLSLDNAFADEDVSEFVGRIRRFLRLGADEPV
IITAEPKIDGLSLSIRYENGRLVTAATRGDGQVGENVTANARTIADIPNVLSGDFPEVLE
VRGEVYMSHVDFAELNRRNGEAGKQIFANPRNAAAGSLRQLDTSITASRPLRFFAYAWGE
VSEMPADTQMGMVAAFGRYGFKTNPLMKVFDSVEGLLSQYRTIEANRATLGYDIDGVVYK
VDRLDLQQRLGFVSRSPRWAIAHKFPAEKATTTLLGIDIQVGRTGSLTPVARLQPVTVGG
VVVTNATLHNEDYIKGIGNSGQPIRESRDIRVGDTVIVQRAGDVIPQILDVVMEKRPAEA
QPYQFPTRCPACDSHAVREEGEVVRRCTGGLICPAQAVERLRHFVSRNAFDIEGLGEKQI
EFFFQSQDPALHIGSPADIFTLKRRQEGSLTKLENIDGFGATSARKLFAAIDDRRQVEFS
RFLFALGIRHIGETNAKRLARHYVSFDAFRAAGTTAVMPEGKGDKGNAAWQELTGVNGIG
GIVAEAVVEFFAEEHNRQVLDALLAEVTPLDEERIGDVSSPVSGKTVVFTGSLEKMSRDE
AKAMAEKLGAKVAGSVSKKTDLVVAGPGAGSKLKAATDLGIEVITEDQWFERIGQAG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagaaatcagtcgattcgctaagcgaggcagaagccgcggccgagcttgcgcgg
ctgaccgaagagattgccggccatgacctgcgctatcacgccgacgatgcgccgacgatt
tcggacgccgactatgatgcgttgcgccggcgcaacctcgcgatcgagcagcgcttcccc
caactggtacgcgaggattcgccgtcgaagtcggttggcgcggcagtgtcggagaaattc
ggcaaggttgcccatgtcgtgccgatgctgtcgctcgacaacgcttttgccgacgaggat
gtgagcgagttcgtcggccgcatcaggcgcttcctcaggcttggcgcggacgagccggtg
atcatcacagccgagccgaagatcgacggcctgtcgctgtcgattcgctacgagaacggg
cggctggtgacggcggcgacacgcggcgatggccaggtcggggaaaacgtcaccgccaat
gcccgcaccatcgccgacatcccgaacgtgctgtcgggcgatttccccgaggtgctggag
gtgcgcggcgaggtctatatgagccacgtcgatttcgccgagctcaaccgccgcaacggc
gaggcgggcaagcagattttcgccaatccgcgcaatgcggcggcaggctcgctgcgccag
ctcgacacctcgatcacggccagccggccgcttcgcttctttgcctatgcctggggcgag
gtgagcgagatgccggccgacacccagatgggcatggttgcagccttcggccgttatggc
ttcaagaccaatccgctgatgaaggtgttcgacagcgtcgaaggcctgctgtcgcaatac
cggacgatcgaggccaatcgggcgacgctcggttacgacatcgacggcgtggtctacaag
gtcgaccgcctcgacctgcagcagcggcttggcttcgtctcgcgctcgccgcgctgggcg
atcgcgcacaagttcccggcggagaaggcgacgacgacgctgctcggcatcgacatccag
gtcggccgcaccggctcgctgacgccggtggcgcggctgcagccggtgacagtcggcggc
gttgtggtgaccaacgccacgctgcacaacgaggactacatcaagggcatcggcaacagc
ggccaaccgatccgcgagagccgcgacatccgtgtcggcgacacggtgatcgtccagcgg
gcaggcgacgtcattccgcagatcctcgatgtggtcatggaaaagcggccggcggaggcg
cagccataccagttcccgactcgctgcccagcctgcgacagccacgcggtgcgcgaggag
ggcgaggtggtgcggcgctgcaccggcggcctgatctgcccggcgcaggcggtggaacgg
cttcgccacttcgtctcgcgcaatgccttcgatatcgaagggctcggcgaaaagcagatc
gagttcttcttccaatcgcaggatccggcgctgcatatcggctcgcccgccgacatcttc
acgctcaagcgtcggcaggagggctcgctgaccaagctagagaacatcgacggtttcggt
gcgacctcggcgcgcaagctgtttgcggccatcgacgatcgccgccaggtcgagttctcg
cgcttcctgtttgcgctcggcatccgccatatcggcgagaccaatgccaagcggctggcc
cgccactacgtcagtttcgacgcattccgcgctgccggtaccactgcggtgatgccagag
gggaagggcgacaagggcaacgccgcctggcaggaactgaccggggtcaacggtatcggc
ggcattgtcgccgaagcggtcgtcgaattctttgccgaggagcacaaccggcaggtgctc
gacgcgttgttggcggaagtgacgccgctcgacgaggagcgtatcggcgacgtgtcctcg
ccggtctctggcaagacagttgtctttaccggatcgctcgaaaagatgtcgcgcgacgaa
gccaaggccatggccgagaagctgggggccaaggtggcgggctcggtgtcgaagaagacc
gacctggtggtggccgggccgggcgcggggtcgaagctcaaggctgcgacagacctcggc
atcgaggtgatcaccgaggaccagtggttcgagcgcatcgggcaggcgggctga
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integrated database retrieval system
