Antarcticibacterium arcticum: FK178_00985
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Entry
FK178_00985 CDS
T06142
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
anp
Antarcticibacterium arcticum
Pathway
anp03030
DNA replication
anp03410
Base excision repair
anp03420
Nucleotide excision repair
anp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
anp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FK178_00985 (ligA)
03410 Base excision repair
FK178_00985 (ligA)
03420 Nucleotide excision repair
FK178_00985 (ligA)
03430 Mismatch repair
FK178_00985 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
anp03032
]
FK178_00985 (ligA)
03400 DNA repair and recombination proteins [BR:
anp03400
]
FK178_00985 (ligA)
Enzymes [BR:
anp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FK178_00985 (ligA)
DNA replication proteins [BR:
anp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FK178_00985 (ligA)
DNA repair and recombination proteins [BR:
anp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FK178_00985 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FK178_00985 (ligA)
MMR (mismatch excision repair)
DNA ligase
FK178_00985 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FK178_00985 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Auto_anti-p27
BRCT_2
Mig-14
HHH
PADR1_N
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QED36381
UniProt:
A0A5B8YFN5
LinkDB
All DBs
Position
216568..218562
Genome browser
AA seq
664 aa
AA seq
DB search
MDIEERIKTLREELHQHNYNYYVLDKPVISDYDFDIKLKELQELEDHNPEFYDPNSPTQR
VGGAVTKQFETLAHDYPMYSLSNSYSREELEDWEKRVKKLVDGKVEYVCELKYDGASISL
TYESGKLTRAITRGDGVKGDNVTSNVRTILSIPVHLRGDFPPKFDIRGEIVLPYEGFAKM
NAERIEAGEEPYANPRNTASGSLKLQDSAEVAKRPLDCLLYNIVGEKLGIRSQYESLEHA
REWGFKVPKEAKLVNNVDEILEYVNHWEKHRHDLPYEIDGVVVKVNDFHQQDELGFTAKS
PRWAIAYKFKAEQESSILKKITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIEK
LDIREGDTVFVEKGGEIIPKIVGVDFTKRDPNSLATKYITHCPECETPLVRNEGEAQHYC
PNLSGCPPQIIGRIQHYISRKAMDIEGLGGETVTLLVNEGLIENYADLYDLTKEQVLPLE
RMADKSAENLIQGIERSREIPFERVLFALGIRYVGETVAKKLARHYKSIAALSEASEEEL
IRVDEIGVRIAQSIRAFFSLEENRVLVQRLKEKGVQMEIAAEDFAHHTNKLNGDTYVISG
VFSRVSRDELKKIIEENGGKVSGSISSKTNFLVAGENMGPSKLAKAEKLGTRILSEEEFL
EMVK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggatattgaagaaagaataaagacactgagagaagaacttcaccagcataattataat
tattatgtgctggataaacctgtgatctcagattatgattttgatataaaactgaaggag
cttcaggaactggaagaccacaacccggaattctatgatcccaattcccccacacaaagg
gtaggcggggctgtcacaaagcagtttgaaaccttagcacatgattatcctatgtattcg
ctttcaaattcctattcccgggaggagctcgaagactgggaaaagcgggtaaaaaaattg
gtagatggaaaggtggaatatgtttgcgaattaaaatatgacggtgcatcaataagcctt
acctatgaaagcggaaaattaacacgggctataacccggggagacggggtaaagggcgat
aatgttaccagcaatgtgagaactattctatccataccggtgcatttgaggggagatttt
ccacctaagtttgacatccgcggggagatcgtactgccttatgaaggatttgcaaaaatg
aatgcggaaagaattgaggccggcgaagaaccttatgcgaacccgcgaaatacggcttca
ggaagtctcaagctacaggacagtgctgaggttgccaagcggccccttgattgtcttttg
tataatatcgtaggggagaaacttggcataaggtcgcaatatgaaagcctggaacatgcc
agggaatggggtttcaaagtgccaaaagaagcaaaattggtaaataatgtagatgagatc
ctggaatatgtaaaccattgggaaaagcaccgtcatgatcttccgtatgaaatagacggg
gtagtggtgaaggtgaatgattttcaccagcaggatgaactagggtttaccgcgaaatct
ccccgttgggcaattgcctataaattcaaggcagaacaggaatcttctatattaaagaag
atcacttaccaggtgggccgcaccggcgcaataaccccggtagcaaatcttgaacctgtt
caactggcaggaaccattgtaaagagagcttcccttcataatgcagatcaaattgaaaaa
ctcgatatacgggaaggagatactgtttttgttgaaaaagggggggagatcatccccaag
atagttggagtagattttaccaaacgtgatccaaattcccttgccacaaaatatattacc
cattgccccgaatgtgagacccctttagttagaaatgagggtgaagcacaacattattgc
cccaatttaagcggttgccccccacaaatcattggccgtatacaacattatatttcacga
aaggcgatggatattgaagggctgggaggagagacagttacattgctggtaaatgaaggg
ctcatagagaattatgccgatctctatgaccttaccaaagagcaggttctaccgctggaa
aggatggccgataaatctgccgaaaatttaatacagggaatagaaagatccagggaaatt
ccttttgaaagggtgttattcgctctgggaataaggtatgttggggaaaccgtggcaaaa
aagctggcgcgacattataaaagtattgcggccctctcagaagcttcagaagaggagctt
attcgtgtagatgagattggggtacgtatagcacaaagcataagggcttttttctctctc
gaagaaaacagggtcctggtgcaacgattaaaggaaaaaggtgtgcaaatggaaatagcg
gccgaagattttgctcaccacaccaataaattaaacggggatacctatgtaatatcggga
gtattttccagggtttcacgagatgagttaaagaagatcattgaagaaaacgggggtaaa
gtatcaggttccatatcttcaaaaacaaatttccttgtagcgggagaaaatatgggccca
agtaaacttgccaaagccgaaaaacttggcacccgtatccttagtgaagaggaatttctg
gaaatggtcaaataa
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