KEGG   Amygdalobacter nucleatus: PYS63_03660
Entry
PYS63_03660       CDS       T09414                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
anq  Amygdalobacter nucleatus
Pathway
anq03030  DNA replication
anq03410  Base excision repair
anq03420  Nucleotide excision repair
anq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:anq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PYS63_03660 (ligA)
   03410 Base excision repair
    PYS63_03660 (ligA)
   03420 Nucleotide excision repair
    PYS63_03660 (ligA)
   03430 Mismatch repair
    PYS63_03660 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:anq03032]
    PYS63_03660 (ligA)
   03400 DNA repair and recombination proteins [BR:anq03400]
    PYS63_03660 (ligA)
Enzymes [BR:anq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     PYS63_03660 (ligA)
DNA replication proteins [BR:anq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     PYS63_03660 (ligA)
DNA repair and recombination proteins [BR:anq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     PYS63_03660 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PYS63_03660 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     PYS63_03660 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      PYS63_03660 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 PTCB-BRCT HHH_5 DNA_ligase_ZBD HHH BRCT_2 Auto_anti-p27
Other DBs
NCBI-ProteinID: WEG36273
LinkDB
Position
808439..810874
AA seq 811 aa
MENLNDLFVSYPLILQKYQAGQVLTKEEIISLFSKVKMREVTAFYLDLQARLQTYAKAYY
DEGNSNLADWDYDFAYRILETLSETFSTLKLYSTLTENVGAVEPAINSQPEQLSFFTDTP
SAEPTPKQIKSNKVKSNETEANKASKSSLFPKEAHAVKLESLQDLFSQVELFSALDNMRA
DLVSKGISADEVNNLGFSVEEKIDGLSLAALYEHGKLTRALTRGNGLVGDNVTANALMIR
NLPAKIDCPLDLLEIRGEVYMPKAAFQKLNEDLYTDLIDKGVDPELASSKLFANARNACV
GSLKQKDAKVTYARNLQIFVFNWQRASEIVTNSHVDTLHEMQNYGLPVIASKQLYKTNAD
IYAACQAILARRESLSYGIDGAVIKLDNLAYRKLLGSTAKTPRWSYAYKFPPEQVKTKLL
DIKVQVGRSGKLTPLAIVEAAEVQGSTIRKASLHNFDYLSKLDLRIGDTVCLHKAGDIIP
EITAYVKELRPEDAKVYQAPSLCPVCQSKLFTKGQDVFCPNFNCPQQILLRFAYFTSKEA
MNIANLGEKTLAQFIDAGFLHTLPDLYRLHDHYAEIAKLKGFATVNSLNEQGEVELRVPK
FDEIWRSIEHSKQNTASQLLTALGLPELGVTMARKLSKHFKNPMAFFNSSEEELLALPDV
GPTIAQIWSEIFMSANFRDLISEFKDLGLKMLDENFVSQAAKSNKLDSTDSNFNLLLEQG
YIDAKGNFNKEIQKAKFWLDKKFVCTGTFQKIKRSDLVRLLTSLGAQVQATVNKQTNYLI
VGEKAGSKLQKAEKLGISCLSEADFWQIFAK
NT seq 2436 nt   +upstreamnt  +downstreamnt
atggaaaatttaaacgacctatttgttagctatccgttgattttgcaaaaatatcaagct
ggacaggtcttaactaaggaagagattattagtctattttctaaagttaagatgagagaa
gttactgccttctatcttgatttgcaagcacgtttgcagacgtatgccaaagcctattat
gacgagggtaattctaatttagctgactgggattatgattttgcatatcgtattttagaa
actttgagtgaaacatttagcacgcttaaactatacagcactttgacagagaatgtcggt
gcggttgaacctgcaattaatagtcaacctgaacagcttagcttttttaccgatacaccg
tcagctgagcctacgcctaagcagattaagtctaacaaagttaagtctaatgaaactgag
gctaataaagcttcaaagtcaagcttatttccaaaagaagcgcatgctgtgaagttggag
tctttgcaggatttgttcagccaagttgaacttttttccgcacttgataatatgcgcgct
gacttagtttctaaggggataagcgctgatgaagttaataatttgggcttttctgttgaa
gaaaaaattgacggcctttcgttggctgctttgtatgagcatggtaagttgactagggcc
ttgacgcgtggcaatggcctagttggcgacaatgtgacagctaatgctctgatgattcgg
aatttgccagctaaaattgactgtcctttggatttgcttgaaattcgtggcgaagtttat
atgcctaaggccgcttttcaaaaactgaatgaagatttgtatacagacttaattgacaag
ggtgttgatccggaattagcttcttctaagttgtttgccaatgcgcgtaatgcctgtgtt
ggctccttgaagcaaaaagatgccaaggtcacttatgcccgtaatttgcagattttcgtg
tttaattggcaaagagcttccgaaatagtgacaaatagccatgttgatactttacatgaa
atgcagaattacggtctgccagtcattgcaagtaagcaactttataagacaaatgctgat
atttatgcagcttgtcaggcaattttagctcgtcgtgaaagcttaagctacggcattgat
ggcgctgtaattaaattggataacttagcctatcgtaaactgttaggttcaactgccaaa
acgccacgttggtcatatgcctataaatttccacctgaacaggtcaaaacaaaattgttg
gatattaaggtgcaagttggtcgtagcggtaaattgacgcctttagccattgttgaggca
gccgaagtacagggcagcaccattcgcaaagccagtttgcataatttcgactacttaagc
aaattagatttgcgcattggcgatacagtttgtctacataaagctggtgacattattcct
gaaattacagcttatgtgaaagaattaaggcctgaagatgcaaaggtatatcaagcacct
tcactttgcccagtctgtcaatctaagctgtttacgaaaggtcaagatgtcttttgtcct
aattttaattgccctcaacaaattttgttgcgctttgcttactttacaagtaaagaggcg
atgaatatcgctaatttgggtgaaaagaccttagctcaatttatcgatgctggctttttg
cacaccttacctgatctatatcgtttgcatgatcactatgctgaaatagccaaattaaaa
ggatttgccacagttaatagcttgaatgaacagggtgaagttgaacttagagtgccaaaa
tttgatgaaatatggcgttcaattgaacacagtaagcaaaatacagctagccagctcctt
actgctttaggtttgccagaacttggggtgacgatggcaaggaagttaagtaaacatttt
aaaaatccaatggctttctttaatagtagtgaagaagagctcttggctttgccagatgtt
ggaccaacaattgcccaaatttggtcggaaatttttatgagcgctaactttagagactta
atttccgagttcaaagacttaggcttaaagatgcttgatgagaattttgtaagtcaagca
gcaaaaagcaataagcttgattcgacagatagcaattttaatctgttgcttgagcaaggc
tatattgatgccaaaggtaattttaataaagagatacaaaaggctaaattttggttggat
aagaaatttgtttgtactggtactttccaaaagattaagcgcagcgatctagttagactt
ctaactagcttaggtgctcaggtacaagctactgtaaataagcagacaaattacttaatt
gtaggtgaaaaagccggttccaagctacaaaaagctgaaaaattaggtattagctgctta
tcagaggctgatttttggcaaatttttgctaaataa

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