Arcobacter nitrofigilis: Arnit_1604
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Entry
Arnit_1604 CDS
T01235
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ant
Arcobacter nitrofigilis
Pathway
ant03030
DNA replication
ant03410
Base excision repair
ant03420
Nucleotide excision repair
ant03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Arnit_1604
03410 Base excision repair
Arnit_1604
03420 Nucleotide excision repair
Arnit_1604
03430 Mismatch repair
Arnit_1604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ant03032
]
Arnit_1604
03400 DNA repair and recombination proteins [BR:
ant03400
]
Arnit_1604
Enzymes [BR:
ant01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Arnit_1604
DNA replication proteins [BR:
ant03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Arnit_1604
DNA repair and recombination proteins [BR:
ant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Arnit_1604
NER (nucleotide excision repair)
GGR (global genome repair) factors
Arnit_1604
MMR (mismatch excision repair)
DNA ligase
Arnit_1604
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Arnit_1604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
Nlig-Ia
HHH_5
BRCT_2
HHH
DNA_ligase_ZBD
H-kinase_dim
Motif
Other DBs
NCBI-ProteinID:
ADG93258
UniProt:
D5UZN9
LinkDB
All DBs
Position
complement(1612477..1614423)
Genome browser
AA seq
648 aa
AA seq
DB search
MTQNEYNEKINILISWAIAYYVEDNPQASDEEYDKLSRECLAYEQENPSLSHPNSPNKRV
GGFVLEGFEKAAHLSRMWSQEDVFNTVELEDWIKRAQKVNTNLEFYCEPKFDGASLNLIY
ENGVLKQAITRGDGSIGEDVTNNVKTIHSIPLQIKEQSLIEIRGEIVIKKADFEKINEER
AKNGEQLFANPRNAAAGSLRQLDPTVTAKRKLFFNVWGIGQHSLDFTKHSEMMEYVYSLG
FVHPPMTTKTTTVEGIEELYHKIIASRNSITMMLDGMVIKINDIETQEELGYTVKFPRWS
CAYKFPAVEKTTTIKDIIQQVGRTGVITPVAVVEPTLIDGSTVERASLHNYDEIARLDLR
INDQVIIIKSGDIIPKITKVFVERRDGTQEKITRPTLCPKCRSELLDEGTLIKCQNLDCP
AIIVNSIIYFASKNCMNIDGLGNKIVETLVREKKIYDILDLYSLKYEDLENLEGFKEKKI
NNLLNAIEKTKANSLHRVINALGIEHIGEVASKQICLEFGLDVVNIDFDSLVALDGIGEQ
MANSFVEFMRVNEELVSKLIATINPTVEEKIEVSENAFKGKTVVITGTMSVSRGEVKKQL
EALGAKVSSSVSKKTDYVIYGEDAGSKYDKAIELNVKTINEEEMNNMI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaaacgaatacaatgaaaaaataaatatattaatatcatgggcaatagcttat
tatgtagaagacaatccccaagcaagtgatgaagagtatgataaattatcaagagaatgt
ttagcttacgagcaagaaaatccaagtctatcacatcctaattcaccaaataaaagagtt
ggtggttttgttttagaagggtttgaaaaagctgctcacctttcaagaatgtggtcacaa
gaagatgtttttaatacggtcgaattagaagattggataaaaagagcacaaaaagtaaat
acaaatttagagttttattgcgagccaaaatttgatggggcaagtttaaatttaatctat
gaaaatggtgtcttaaaacaagcaataacaagaggtgatggaagtattggagaagatgtg
acaaataatgtcaaaactatacattcaattcctctacaaataaaagagcaatctcttata
gaaataagaggtgaaatagttataaaaaaagctgattttgagaaaataaatgaagagaga
gctaaaaatggtgaacaactatttgcaaaccctagaaatgcagcagctgggagtttaaga
caactagatccaactgttacagctaagagaaaactattttttaatgtttggggaattggt
caacatagtttggattttacaaaacattctgaaatgatggaatatgtgtattcacttggt
tttgttcaccctccaatgactacaaaaactacaactgtagagggaatagaagagttatat
cataaaataattgcttcaagaaatagcatcacaatgatgcttgatggaatggtaataaaa
atcaatgatatagaaacccaagaagaattaggatatacagtaaaatttcctagatggtct
tgtgcatataagtttccagctgtcgaaaaaacaactacaataaaagatattattcaacaa
gttggacgaacaggagttataacacctgttgcagttgtagaacccactcttattgatggt
tctacagttgagagagctagtttgcataactatgatgagatagcaagacttgatttaaga
ataaatgaccaagttattattataaaaagtggagatattattcctaagattacaaaagtt
tttgtggagcgaagagatggaacacaagaaaagattactcgccctactttatgtcctaaa
tgtcgaagtgaacttttagatgaaggaacactaattaagtgccagaatcttgattgtcca
gcaataattgtaaactcaataatatattttgcaagtaaaaattgtatgaatatagatggt
ttaggaaataaaatagttgaaactttagttagagagaaaaagatatatgatatacttgat
ttatactcacttaagtatgaagatttagaaaatcttgaaggttttaaagaaaaaaaaata
aataatcttttaaatgctatagaaaaaacaaaagctaactctctacatagagttataaat
gctttaggaattgaacatattggagaagtagcttctaaacaaatatgtttagaatttggt
ttggatgttgtgaatattgactttgattcccttgtggcacttgatggtattggggaacaa
atggcaaactcatttgtagaatttatgagagtaaatgaagagcttgtctcaaaactaata
gctactataaatccaacagtcgaagaaaaaatagaagtaagtgaaaatgcttttaaagga
aaaacagtcgttataacaggaactatgagtgtaagtcgtggtgaagtaaaaaaacaacta
gaagccttaggcgcaaaagttagttctagtgtatctaaaaagacagattatgtaatatat
ggggaagatgctggaagtaaatatgataaagctatcgagctaaatgttaaaactataaat
gaagaagaaatgaataatatgatttaa
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