Arvicanthis niloticus (African grass rat): 117694664
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Entry
117694664 CDS
T08817
Symbol
Trpc5
Name
(RefSeq) short transient receptor potential channel 5
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04360
Axon guidance
anu04929
GnRH secretion
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
117694664 (Trpc5)
09158 Development and regeneration
04360 Axon guidance
117694664 (Trpc5)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
anu01009
]
117694664 (Trpc5)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
anu04040
]
117694664 (Trpc5)
Protein phosphatases and associated proteins [BR:
anu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117694664 (Trpc5)
Ion channels [BR:
anu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117694664 (Trpc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
117694664
NCBI-ProteinID:
XP_034341529
LinkDB
All DBs
Position
X:complement(90272998..90397136)
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AA seq
976 aa
AA seq
DB search
MAQLYYKKVNYSPYRDRIPLQIVRAETELSAEEKAFLSAVEKGDYATVKQALQEAEIYYN
VNINCMDPLGRSALLIAIENENLEIMELLLNHSVYVGDALLYAIRKEVVGAVELLLSYRK
PSGEKQVPTLMMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQKRVTIPRPHQIRCNCVE
CVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEFKAE
YEELSQQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDPQKYHDLAKLKVAIKYHQKE
FVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLISPRSNLGLFI
KKPFIKFICHTASYLTFLFMLLLASQHIVRTDLHVQGPPPTVVEWMILPWVLGFIWGEIK
EMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNGSRPREEWEMWHPTLIAEA
LFAISNILSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYF
YYETRAIDEPNNCKGIRCEKQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFV
GATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTLPPP
FNIIPSPKSFLYLGNWFNNTFCPKRDPDGRRRRHNLRSFTERHADSLIQNQHYQEVIRNL
VKRYVAAMIRNSKTNEGLTEENFKELKQDISSFRYEVLDLLGNRKHPRRSFSTSSAEFSQ
RDDTNDGSGGARAKSKSVSFNLGCKKKACHGGPLIRTMPRASGTQGKPKAESSSKRSFMG
PSFKKLGLFFSSKFNGQTPEPPSEPMYTISDGIAQQHYMWQDIRYSQMEKGKAEACSQSE
MNLSDVELGEIRGAAARSSECPLACSSSLHCASGICSSNSKLLDSSEDVFETWGEACDLL
MHKWGDGQEEQVTTRL
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctgtactacaagaaggtcaattactcaccatacagagaccgcatccccctc
caaatcgtgagggccgagactgagctgtctgctgaggagaaagccttcctcagtgctgtg
gagaagggggactatgccacggtgaagcaggcactgcaggaggctgagatctactacaat
gtcaacatcaactgcatggatcctttgggcagaagcgccctgctcattgccattgaaaat
gagaacttggagatcatggagctcctgctgaaccacagtgtgtatgtgggcgatgcatta
ctctatgccatccgcaaggaggtggtaggagctgtggaacttctgcttagctacaggaag
cccagtggagagaaacaggttcccactctgatgatggacactcagttctctgagttcaca
ccagacatcactcccatcatgttggcagcccacaccaacaactatgaaatcatcaaattg
cttgtccaaaaacgagtcactatcccaaggccccaccagatccgctgcaactgtgtggag
tgtgtatccagttcagaggtagacagtctgcgtcattcaaggtcccgactgaacatatac
aaggctctggcaagcccctcgctcattgccttatcaagcgaggaccccatcctcacggcc
ttccgtctgggctgggaactcaaggagctgagcaaggttgaaaatgagttcaaggctgag
tatgaggagctctcccaacaatgtaagctctttgccaaggacctgctggaccaagctcgg
agctcccgtgaactggagatcattctgaaccatcgagatgaccacagtgaagaactcgac
ccacagaagtaccacgacctagccaagctgaaggtagcaatcaaatatcaccagaaagag
tttgtcgctcagccaaactgccaacaattgctggccaccttgtggtatgatggcttccct
ggatggcggagaaaacactgggtagtcaagcttctgacctgcatgaccattggattcctg
tttcctatgctgtccatcgcctatctgatctcacccagaagcaaccttgggcttttcatc
aagaaaccctttatcaagttcatctgccacacagcatcctatctgacattcctcttcatg
cttctcctggcttctcagcatatcgtcagaacagacttgcatgttcaagggcctcctcca
actgttgtggaatggatgatactgccttgggttctaggtttcatttggggggagataaaa
gaaatgtgggatggtggattcacggaatacatccatgattggtggaacttgatggatttt
gcaatgaactccctctacctggcaactatttctttgaagattgtggcctatgtcaagtat
aatggttctcgtccaagggaagaatgggaaatgtggcacccgactctgattgcagaagca
ctcttcgcaatatccaacattttaagttccttgcgtctcatatccttgttcacagccaac
tcccatttagggcctctgcagatctctttgggacgcatgctgcttgatatactcaaattt
ctctttatctactgcctagtactactggcttttgccaatggactgaaccagctttatttt
tactatgagaccagagctattgatgaacctaacaactgcaaggggatccggtgtgaaaaa
cagaacaacgccttctccacgctctttgaaacccttcagtcacttttctggtctgtcttt
ggccttttaaatctctatgttaccaatgtgaaggcccgacatgagttcaccgagtttgtg
ggagctactatgtttgggacatacaacgtcatctccctggtagtcctcctgaacatgctt
attgccatgatgaacaactcctaccagcttattgccgatcatgctgatattgagtggaag
tttgcgagaacaaagctctggatgagttactttgatgaaggtggcaccttaccacctcct
ttcaacattatccccagccccaaatcatttctctatcttggcaactggttcaacaacacc
ttctgtcccaaaagagaccccgatggaagacgaaggaggcacaacttgagaagcttcaca
gaacgtcatgctgatagcctgatccaaaatcaacattatcaggaagttatcagaaattta
gtcaagagatacgtggctgcgatgataagaaactcgaaaacaaatgaggggctaacagaa
gaaaattttaaggaattaaagcaggacatttccagctttcgatatgaagtacttgacctc
ttgggaaatagaaaacatccaagaagaagcttttccactagcagcgctgaattctctcaa
agggatgataccaatgatggcagtggtggggctcgggccaaatctaagagtgtctctttc
aatttaggctgcaagaaaaaggcctgccatggaggccctctcatcagaaccatgccaaga
gctagtggcactcaaggaaagccaaaagctgagtcgtcaagcaaacggtccttcatgggt
ccctctttcaagaaactgggtctcttcttctcgtccaagtttaatggtcagacacctgaa
cctccttcagagccaatgtacacaatctctgatggcattgcacagcagcattatatgtgg
caagacatcagatattctcagatggagaaagggaaggcagaggcctgttctcaaagcgag
atgaacctcagtgacgtagagttaggtgaaatccggggtgctgccgctcggagcagtgaa
tgccccctagcctgttccagctctcttcactgtgcgtctggcatctgctcctcaaattcg
aaacttttagactcgtcagaggacgtatttgaaacttggggagaagcttgtgacttgctc
atgcacaaatggggtgacggacaggaagaacaagttacaactcggctctaa
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