Arvicanthis niloticus (African grass rat): 117707741
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Entry
117707741 CDS
T08817
Symbol
Trpc3
Name
(RefSeq) short transient receptor potential channel 3
KO
K04966
transient receptor potential cation channel subfamily C member 3
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04360
Axon guidance
anu05017
Spinocerebellar ataxia
anu05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
117707741 (Trpc3)
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
117707741 (Trpc3)
05022 Pathways of neurodegeneration - multiple diseases
117707741 (Trpc3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
anu04040
]
117707741 (Trpc3)
Ion channels [BR:
anu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117707741 (Trpc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
Motif
Other DBs
NCBI-GeneID:
117707741
NCBI-ProteinID:
XP_034357160
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All DBs
Position
4:complement(21778342..21841187)
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AA seq
909 aa
AA seq
DB search
MSTKVKKCREPARVTLPAPEEEDGEAEGTEAQRRRRGWRGVNGGLEPPCPRAPPSPGPDA
SSEGSPSRWRTAGMRDKGRRQAVRGPAFMFGSRGPSLTAEEERFLDAAEYGNIPVVRKML
EESRTLNVNCVDYMGQNALQLAVGNEHLEVTELLLKKENLARIGDALLLAISKGYVRIVE
AILGHPGFAASRRLTLSPCEQELRDDDFYAYDEDGTRFSPDITPIILAAHCHKYEVVHLL
LLKGARIERPHDYFCRCADCAEKQRLDAFSHSRSRINAYKGLASPAYLSLSSEDPVLTAL
ELSNELAKLANIEKEFKNDYRKLSMQCKDFVVGVLDLCRDSEEVEAILNGDLESAEPLER
HGHKASLSRVKLAIKYEVKKFVAHPNCQQQLLTIWYENLSGLREQTIAIKCLVVLVVALG
LPFLAIGYWIAPCSRLGKILRSPFMKFVAHAASFIIFLGLLVFNASDRFEGITTLPNITV
IDYPKQIFRVKTTQFTWTEMLIMVWVLGMMWSECKELWLEGPREYIVQLWNVLDFGMLSI
FIAAFTARFLAFLQATKAQQYVDSHVQESDLSEVTLPPEVQYFTYARDKWLPSDPQIISE
GLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVLFIMVFLAFMIGMFILY
SYYLGAKVNPAFTTVEESFKTLFWSIFGLSEVTSVVLKYDHKFIENIGYVLYGIYNVTMV
VVLLNMLIAMINSSYQEIEDDSDVEWKFARSKLWLSYFDDGKTLPPPFSLVPSPKSFVYF
IMRITNFSKCRRRRLQKDLELGMGNSKSRLNLFTQSNSRVFESHSFNSILNQPTRYQQIM
KRLIKRYVLKAQVDKENDEVNEGELKEIKQDISSLRYELLEDKSQATEELAILIHKLSEK
LNPSVLRCE
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaaggtcaagaagtgccgggagcccgcgagggtgaccttgcccgcgccagag
gaggaggatggcgaggccgaaggaacggaggcgcagcgccgccgccggggctggaggggc
gtcaacggcgggctggagccgccctgtccgcgcgcgccgccgtccccggggcccgacgcg
tcatcggagggcagcccatccaggtggcgcactgcagggatgcgtgacaagggcaggcgc
caggcagtgcgtggcccagccttcatgttcggatctcgtgggcccagcctcacagccgag
gaggaacgcttcctggatgctgcggagtacggcaacatccctgtggtgcgcaagatgcta
gaggagtctcgcacgctcaatgtcaactgcgtggactacatgggccagaacgcgctgcag
ctggccgtaggcaatgagcatctggaagtgaccgagctgctgctgaagaaggagaacctg
gcgcgtatcggtgatgcgctgctgctagccatcagcaagggctatgtgcgcatcgtggag
gccatcctgggccacccaggctttgcagccagccggcgcctgaccctcagcccttgcgag
caagaactgcgtgatgatgacttctatgcttacgacgaggatggcacacgcttctcgcct
gacatcacacccatcatcctggctgcacattgccataaatacgaggtggtgcacctgctg
ctactcaagggtgcacgcattgagcggccacacgactacttctgtcggtgcgctgactgt
gctgagaagcaaaggcttgatgccttcagccactcgaggtccaggatcaatgcctacaag
ggactggccagcccagcatacttgtcgctgtccagcgaggaccctgtgctcacagcgctg
gaactcagcaatgagctcgccaagctagcgaacatagagaaggagttcaagaatgactac
agaaagctctccatgcaatgcaaagacttcgttgtgggtgtgctggacctgtgtcgggac
tctgaggaggtggaagccattctgaacggagatctggaatcagctgagcccctggagaga
cacgggcacaaagcatcactgagtcgtgtcaaacttgccattaagtatgaagtcaaaaag
tttgtggctcaccccaactgccaacagcagcttttgacgatctggtatgagaacctctct
ggcctccgggagcagaccatcgctatcaagtgtctggttgtgttggtcgtggccttgggc
cttccattccttgccatcggctactggattgcaccttgtagcaggctggggaaaattctt
cgaagtcccttcatgaagtttgtggcacacgctgcctccttcatcatctttctgggtctg
cttgtgttcaacgcctcagacaggtttgaaggcatcaccacactgccaaacatcactgtt
atcgactaccccaagcaaatcttcagggtgaagaccacgcagttcacatggacggaaatg
ctaattatggtctgggttcttgggatgatgtggtccgagtgcaaggagctgtggctggag
gggccccgggagtacatcgtgcagttgtggaacgtgctcgacttcggcatgctctccatc
ttcatcgccgcgttcaccgccaggttcctggctttcctgcaggccacgaaggcgcagcag
tatgtggacagccacgtgcaggagagcgacctgagtgaagtcacactcccacctgaggtt
cagtatttcacctatgctagagataaatggctcccttctgaccctcagatcatatccgaa
ggcctgtacgccatcgctgtggtgctcagcttctcccggattgcatacatcctccctgcg
aacgagagcttcgggcccttgcagatctctctcgggaggacggtgaaggacattttcaag
ttcatggttctcttcatcatggtgttcctggctttcatgattggcatgttcatactttat
tcttactaccttggggccaaagtaaatcctgcttttaccacggtggaagaaagcttcaag
actttgttttggtccatatttgggctgtctgaagtgacttctgttgtcctcaaatatgat
cacaaattcatagagaatattggatatgttctttatggaatatataatgtaactatggtg
gttgttttactcaacatgctaattgctatgattaatagctcataccaagaaattgaggat
gacagtgatgtagaatggaagtttgctcgttccaaactttggctatcctactttgatgat
ggaaaaacattacctccacccttcagtctggtccctagtccaaaatcatttgtttatttc
atcatgaggatcactaacttttctaaatgtaggaggagaagacttcagaaggatctggaa
ctgggcatgggtaactcaaagtccaggttaaacctcttcactcagtctaactcgagagtt
tttgaatcacacagttttaacagcattctcaatcagccaacacgatatcagcagataatg
aaaagactcataaaacggtatgttttgaaagcacaagtagacaaagaaaatgatgaggtg
aacgaaggtgaactgaaagaaatcaagcaggatatctctagccttcgttatgaacttttg
gaagataagagccaagcaacggaggaattagccatcctgattcataaactcagtgagaaa
ctgaaccccagtgtgctgagatgtgaatga
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